View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4142_high_36 (Length: 242)
Name: NF4142_high_36
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25635748 - 25635522
Alignment:
| Q |
1 |
acagatctcatagttaacttatccaccaaatcaaaatgcaaggcatatagggcctgtttggataacaacttatttgtagttatcacgatttcaaaagcaa |
100 |
Q |
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| T |
25635748 |
acagatctcatagttaacttatccaccaaattaaaatgcaatgcatatagggcctgtttggataacaacttatttgtagttatcacgatttcaaaagcaa |
25635649 |
T |
|
| Q |
101 |
acaataaaa-agttaattaatttccatttaaactatattggaaaacttac-aaaataagcttatgaacaatatcataagttgttttcataagttcaacta |
198 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25635648 |
acaataaaatagttaattaatttccatttaaactatattggaaaacttacaaaaataagcttatgaacaatatcataagttgttttcataagttctacta |
25635549 |
T |
|
| Q |
199 |
aaaaaccacacattgggtagaaaatcc |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
25635548 |
aaaaaccacacattgggtagaaaatcc |
25635522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 32841000 - 32840965
Alignment:
| Q |
158 |
cttatgaacaatatcataagttgttttcataagttc |
193 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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| T |
32841000 |
cttatgaacaatgtcataagttgttttcataagttc |
32840965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 43570466 - 43570504
Alignment:
| Q |
155 |
aagcttatgaacaatatcataagttgttttcataagttc |
193 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
43570466 |
aagcttatgaacaatgtcataagctgttttcataagttc |
43570504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 16451172 - 16451209
Alignment:
| Q |
156 |
agcttatgaacaatatcataagttgttttcataagttc |
193 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
16451172 |
agctcatgaacaatgtcataagttgttttcataagttc |
16451209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 36043958 - 36043994
Alignment:
| Q |
156 |
agcttatgaacaatatcataagttgttttcataagtt |
192 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
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|
| T |
36043958 |
agcttatgaacaatgtcgtaagttgttttcataagtt |
36043994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 7853694 - 7853731
Alignment:
| Q |
156 |
agcttatgaacaatatcataagttgttttcataagttc |
193 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
7853694 |
agcttatgaacaatgtcataagttgtttccataagttc |
7853731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 3887648 - 3887611
Alignment:
| Q |
156 |
agcttatgaacaatatcataagttgttttcataagttc |
193 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
3887648 |
agcttatgaacaatgtcataagatgttttcataagttc |
3887611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 20936245 - 20936210
Alignment:
| Q |
156 |
agcttatgaacaatatcataagttgttttcataagtt |
192 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
20936245 |
agcttatgaaca-tatcataagttgttttcataagtt |
20936210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 5436127 - 5436163
Alignment:
| Q |
157 |
gcttatgaacaatatcataagttgttttcataagttc |
193 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |
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|
| T |
5436127 |
gcttatgaacaatgtcataagttgttttcagaagttc |
5436163 |
T |
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