View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4142_high_42 (Length: 236)

Name: NF4142_high_42
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4142_high_42
NF4142_high_42
[»] chr8 (1 HSPs)
chr8 (1-221)||(42312003-42312223)
[»] chr6 (2 HSPs)
chr6 (1-221)||(20908952-20909172)
chr6 (1-221)||(20923400-20923620)
[»] chr1 (2 HSPs)
chr1 (1-221)||(47247190-47247410)
chr1 (3-168)||(41325887-41326051)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42312003 - 42312223
Alignment:
Q  1 tagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtg 100  Q
    |||||||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42312003 tagtggtggcagagatagtcgaagaacacgacgtcataaccactattaagaagatgagggtgtacaaagtaactgtagggatgaaagagaggcaaatgtg 42312102  T
Q  101 aaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42312103 aaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 42312202  T
Q  201 cggtcaattgatgtatcaaat 221  Q
    |||||||||||||||||||||    
T  42312203 cggtcaattgatgtatcaaat 42312223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20908952 - 20909172
Alignment:
Q  1 tagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtg 100  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20908952 tagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtg 20909051  T
Q  101 aaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 200  Q
    |||||||||||||||||||| |||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20909052 aaatgaggttcaatgttttaggagtgagcataaaatttagggttgaaagacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 20909151  T
Q  201 cggtcaattgatgtatcaaat 221  Q
    |||||||||||||||||||||    
T  20909152 cggtcaattgatgtatcaaat 20909172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20923400 - 20923620
Alignment:
Q  1 tagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtg 100  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923400 tagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtg 20923499  T
Q  101 aaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 200  Q
    |||||||||||||||||||| |||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923500 aaatgaggttcaatgttttaggagtgagcataaaatttagggttgaaagacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 20923599  T
Q  201 cggtcaattgatgtatcaaat 221  Q
    |||||||||||||||||||||    
T  20923600 cggtcaattgatgtatcaaat 20923620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47247410 - 47247190
Alignment:
Q  1 tagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtg 100  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  47247410 tagtggtggtagagatagtcggagaacacgacgtcatagccgctgttaaaaagatgagggtgtacgaagtaactgtcgggatgaaagagagacaaatgtg 47247311  T
Q  101 aaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47247310 aaatgaggttcaatgttttatgagtgagcataaaatgcagggttgaaagacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtg 47247211  T
Q  201 cggtcaattgatgtatcaaat 221  Q
    ||||||||| |||||||||||    
T  47247210 cggtcaattaatgtatcaaat 47247190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 41325887 - 41326051
Alignment:
Q  3 gtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaa 102  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41325887 gtggtggcagagatggtcggagaacacgacgtcatagccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaa 41325986  T
Q  103 atgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatg 168  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||    
T  41325987 atgaggttcaatgttttat-agtgagcataaaatgtaggtctgaaagacaaatatataaaacaatg 41326051  T

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