View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_46 (Length: 201)
Name: NF4142_high_46
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 34141029 - 34141223
Alignment:
| Q |
1 |
atcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
34141029 |
atcaagcctctgcctgagactcaaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttca |
34141128 |
T |
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| Q |
101 |
atagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34141129 |
atagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
34141223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 34137366 - 34137560
Alignment:
| Q |
1 |
atcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttca |
100 |
Q |
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|||||| |||||||| |||||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
34137366 |
atcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttca |
34137465 |
T |
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| Q |
101 |
atagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
34137466 |
atatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
34137560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 34133456 - 34133649
Alignment:
| Q |
2 |
tcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaa |
101 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| || ||| |||||| |
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| T |
34133456 |
tcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaa |
34133555 |
T |
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| Q |
102 |
tagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
195 |
Q |
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|| ||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
34133556 |
tatcagatggatttggaactgcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttggtctgtg |
34133649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 34127182 - 34127376
Alignment:
| Q |
1 |
atcaagcctctgcctgagactcaaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttca |
100 |
Q |
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|||||| || ||||| | |||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| || ||||| ||| |
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| T |
34127182 |
atcaagtctttgcctaatactcaaagggacctcatggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatca |
34127281 |
T |
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| Q |
101 |
atagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
195 |
Q |
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||||||||| ||| | ||||||||| |||||||||||| ||||| |||||||| ||||| |||| |||||| |||| ||| |||||||||||||| |
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| T |
34127282 |
atagcagattgatcttgaacttcatggtggaatattggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttggtctgtg |
34127376 |
T |
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