View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_6 (Length: 432)
Name: NF4142_high_6
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 9384804 - 9385231
Alignment:
| Q |
1 |
tctaacaatctcaatgccctttgaccttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9384804 |
tctaacaatctcaatgccctttgaccttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacct |
9384903 |
T |
|
| Q |
101 |
catttttgttcttcccttctttctcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9384904 |
catttttgttcttcccttctttctcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagaaaa |
9385003 |
T |
|
| Q |
201 |
nnnn-gtagtacagaacttaatatagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385004 |
aaaaagtagtacagaacttaatatagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaa |
9385103 |
T |
|
| Q |
300 |
aatgagttaactttgttctgcattttctttagctccaaaagttggtatgaaattttcttctttgccttctttctgaaattttcataagaagaaacactgt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9385104 |
aatgagttaactttgttctgcattttctttagctccaaaagttggtatgaaattttcttccttgccttctttctgaaattttcataagaagaaacactgt |
9385203 |
T |
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| Q |
400 |
tttcaatgcttgaatcacctttgcttct |
427 |
Q |
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| T |
9385204 |
tttcaatgcttgaatcaccttttcttct |
9385231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 382
Target Start/End: Original strand, 31947894 - 31948271
Alignment:
| Q |
5 |
acaatctcaatgccctttgaccttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatt |
104 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31947894 |
acaatcttaatgccctttgaccttcactattagaataatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatt |
31947993 |
T |
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| Q |
105 |
tttgttcttcccttctttctcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatag-nnnnnnn |
203 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31947994 |
tttgttcttccc-tctttctcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagacaaaaaa |
31948092 |
T |
|
| Q |
204 |
ngtagtacagaacttaatatagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatg |
303 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948093 |
agtagcacaaaacttaatatagatatagtgattgtgtttacttctcttaaaaccctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatg |
31948192 |
T |
|
| Q |
304 |
agttaactttgttctgcattttctttagctccaaaagttggtatgaaattttcttctttgccttctttctgaaattttc |
382 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948193 |
agttaactttgctctgcattttctttagctccaaaaattggtatgaaattttcttctttgccttctttctgaaattttc |
31948271 |
T |
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