View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_high_9 (Length: 389)
Name: NF4142_high_9
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 26292371 - 26292736
Alignment:
| Q |
16 |
caccttccgctaatccttcacaggcttcatcttttccgtccaatcccgcttcgtcgatttcctcggcttccgcgccgagaggcggtatggcaatcggtgt |
115 |
Q |
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| T |
26292371 |
caccttccgctaatccttcacaggcttcatcttttccgtccaatcccgcttcgtcgatttcctcggcttccgcgccgagaggcggtatggcaatcggtgt |
26292470 |
T |
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| Q |
116 |
acctgcccaccaccagagcccttcgcctccgttttcttcttcttttagtcagcattttggtggaatgggtcgttctgattctaccacaaattctaacacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26292471 |
acctgcccaccaccagagcccttcgcctccgttttcttcttcttttagtcagcattttggtggaatgggtcgttctgattctaccacaaattctaacacc |
26292570 |
T |
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| Q |
216 |
tctcaggtatagttttgcattgtgattggaatttaattagtatgcactgtcgttgtacaatgtattgttgccacacatcattggatatatgtgtaaaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26292571 |
tctcaggtatagttttgcattgtgattggaatttaattagtatgcactgtcgttgtacaatgtattgttgccacacatcattggatatatgtgtaaaata |
26292670 |
T |
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| Q |
316 |
aatttacatcgtctgtgtatagatactaattaaacttgaggtttttgtttatgagtatgatgatgt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26292671 |
aatttacatcgtctgtgtatagatactaattaaacttgaggtttttgtttatgagtatgttgatgt |
26292736 |
T |
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