View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_1 (Length: 662)
Name: NF4142_low_1
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_1 |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 22 - 622
Target Start/End: Complemental strand, 24493777 - 24493177
Alignment:
| Q |
22 |
ccacttacatccaatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24493777 |
ccacttacatccaatgagattagacgctgtgtttttaggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacac |
24493678 |
T |
|
| Q |
122 |
cattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493677 |
cattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgta |
24493578 |
T |
|
| Q |
222 |
tgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtggg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493577 |
tgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtggg |
24493478 |
T |
|
| Q |
322 |
tgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggttctaggctga |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493477 |
tgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggttctaggctga |
24493378 |
T |
|
| Q |
422 |
tgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaact |
521 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493377 |
tgtgggtgggaaaagatattagggagtgggagccacggatgttgggaagtgagcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaact |
24493278 |
T |
|
| Q |
522 |
ggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataaccaaggaaaac |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24493277 |
ggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatataagagtgatattgtgtagaataaccaaggaaaac |
24493178 |
T |
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| Q |
622 |
a |
622 |
Q |
| |
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| |
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| T |
24493177 |
a |
24493177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 213 - 622
Target Start/End: Complemental strand, 92951 - 92542
Alignment:
| Q |
213 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
|
| Q |
313 |
aagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
412 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92851 |
aagcgtgagtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggtttggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
92752 |
T |
|
| Q |
413 |
ctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
512 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92751 |
ctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
92652 |
T |
|
| Q |
513 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataacc |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
92651 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtgatattgtgtagaataacc |
92552 |
T |
|
| Q |
613 |
aaggaaaaca |
622 |
Q |
| |
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||| |||||| |
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| T |
92551 |
aagtaaaaca |
92542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 93127 - 92975
Alignment:
| Q |
22 |
ccacttacatccaatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgc |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
93127 |
ccacttacatccaatgagattagacgctgtgttttttggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcactc |
93028 |
T |
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| Q |
122 |
cattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93027 |
cattcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg |
92975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 146
Target Start/End: Complemental strand, 92976 - 92945
Alignment:
| Q |
115 |
ggcacgccattcagaagaagccattgcttgtg |
146 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92976 |
ggcacgccattcagaagaagccattgcttgtg |
92945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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