View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_11 (Length: 359)
Name: NF4142_low_11
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 12648779 - 12648448
Alignment:
| Q |
18 |
tttcctagctatagaacattgatacataccttatttacctttccaatttctgcatttatattgcctatttgagagtattatagaacaaaagtttatgccc |
117 |
Q |
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| T |
12648779 |
tttcctagctatagaacattgatacataccttatttacctttccaatttctgcatttatattgcctatttgagagtattatagaacaaaagtttatgccc |
12648680 |
T |
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| Q |
118 |
gcaaatcacataaagcattcgagtatcatgtttttaagggttggaagtgtgatggctcactttgtttgaagtatttaaagtttgcttataaaaattgagt |
217 |
Q |
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| T |
12648679 |
gcaaatcacataaagcattcgagtatcatgtttttaagggttggaagtgtgatggctcactttgtttgaagtatttaaagtttgcttataaaaattgagt |
12648580 |
T |
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| Q |
218 |
aaagcagaccatatgacaaaagttacttcacaattcaacaaacatatcttggagattagcccgcaaatgccttcctacgcagatgaaacgattattgctc |
317 |
Q |
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| T |
12648579 |
aaagcagaccgtatgacaaaagttacttcacaattcaacaaacatatcttggagattagcccgcaaatgccttcctacgcagatgaaacgattattgctc |
12648480 |
T |
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| Q |
318 |
cgagtaaacttcccttcttcaagccttctctg |
349 |
Q |
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| T |
12648479 |
cgagtaaacttcccttcttcaagccttctctg |
12648448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 11552391 - 11552449
Alignment:
| Q |
26 |
ctatagaacattgatacataccttatttacctttccaatttctgcatttatattgcctatt |
86 |
Q |
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| T |
11552391 |
ctatagtacattgatacgtacctt--ttaaatttccaatttctgcatttatattgcctatt |
11552449 |
T |
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