View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4142_low_12 (Length: 343)
Name: NF4142_low_12
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 21980458 - 21980141
Alignment:
| Q |
19 |
ttgacaagtagggccatcttccagaggatgaagaactacacaatctatgctgtttccatcacaatccgtattgttcttgggttcatgcttgttgctctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21980458 |
ttgacaagtagggccatcttccagaggatgaagaactacacaatctatgctgtttccatcacaatccgtattgttcttgggttcatgcttgttgctctaa |
21980359 |
T |
|
| Q |
119 |
tttggaagtttgacttctcccctttcatggttttgatcatcgccattttgaacgatggaaccatcatgaccatctccaaggacagggtgaagccatctcc |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21980358 |
tttggaagtttgatttctcccctttcatggttttgatcatcgccattttgaatgatggaaccatcatgaccatctccaaggacagggtgaagccatctcc |
21980259 |
T |
|
| Q |
219 |
tgttcccgattcatggaagctcaaagaaatcttcgcaacaggagttgttcttggaacatatatggccatcatgactgcagttttctttcattttattcac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21980258 |
tgttcccgattcatggaagctcaaagaaatcttcgcaacaggagttgttcttggaacatatatggccatcatgactgcagttttcttccattttattcac |
21980159 |
T |
|
| Q |
319 |
gacaccgatttcttctca |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21980158 |
gacaccgatttcttctca |
21980141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 45197323 - 45197132
Alignment:
| Q |
46 |
atgaagaactacacaatctatgctgtttccatcacaatccgtattgttcttgggttcatgcttgttgctctaatttggaagtttgacttctcccctttca |
145 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||| ||||| ||||| || ||||| |||||||||||||||| ||||| ||||| ||||| | |
|
|
| T |
45197323 |
atgaagaactacacaatatacgcagtttccataacaatccgaattgtgcttggctttatgctccttgctctaatttggaaatttgatttctctcctttta |
45197224 |
T |
|
| Q |
146 |
tggttttgatcatcgccattttgaacgatggaaccatcatgaccatctccaaggacagggtgaagccatctcctgttcccgattcatggaag |
237 |
Q |
| |
|
||||||||||||| ||||| | || ||||| || ||||||||||| || ||||| || || |||||||||||| | || |||||||||||| |
|
|
| T |
45197223 |
tggttttgatcattgccatacttaatgatggtactatcatgaccatttcgaaggatagagtaaagccatctcctatgccagattcatggaag |
45197132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 15869517 - 15869598
Alignment:
| Q |
95 |
ttgggttcatgcttgttgctctaatttggaagtttgacttctcccctttcatggttttgatcatcgccattttgaacgatgg |
176 |
Q |
| |
|
|||| |||||| || |||| || || ||||||||||| ||||| || |||||||||||||| || |||||||| || ||||| |
|
|
| T |
15869517 |
ttggcttcatgtttattgcactgatatggaagtttgatttctctccattcatggttttgattattgccattttaaatgatgg |
15869598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 31 - 333
Target Start/End: Complemental strand, 48436849 - 48436547
Alignment:
| Q |
31 |
gccatcttccagaggatgaagaactacacaatctatgctgtttccatcacaatccgtattgttcttgggttcatgcttgttgctctaatttggaagtttg |
130 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| ||| | || |||||||||| |
|
|
| T |
48436849 |
gccatcttccaaaggatgaaaaactacacaatctatgctgtttctatcaccatccgtattgtttttggattcatgcttgtagctttgatatggaagtttg |
48436750 |
T |
|
| Q |
131 |
acttctcccctttcatggttttgatcatcgccattttgaacgatggaaccatcatgaccatctccaaggacagggtgaagccatctcctgttcccgattc |
230 |
Q |
| |
|
||||||| || |||||||| | ||||| ||| | ||||||||||||||||||||||||||||| ||||| || || |||||||| | ||||| ||||| |
|
|
| T |
48436749 |
acttctcaccattcatggtcctcatcattgccgtcttgaacgatggaaccatcatgaccatctctaaggatagagtaaagccatcactagttcctgattc |
48436650 |
T |
|
| Q |
231 |
atggaagctcaaagaaatcttcgcaacaggagttgttcttggaacatatatggccatcatgactgcagttttctttcattttattcacgacaccgatttc |
330 |
Q |
| |
|
||||||||| ||||||||||| || || ||| ||||||||||| | || |||||||| || |||| || ||||| |||| |||||||||| |||||| |
|
|
| T |
48436649 |
atggaagcttaaagaaatctttgctactggaattgttcttggatcttacatggccattatcactgttgtgttcttctatttagttcacgacactgatttc |
48436550 |
T |
|
| Q |
331 |
ttc |
333 |
Q |
| |
|
||| |
|
|
| T |
48436549 |
ttc |
48436547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University