View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_14 (Length: 328)
Name: NF4142_low_14
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 3947514 - 3947220
Alignment:
| Q |
17 |
acacatttgttcttcacaggtgtagaatcatttgacattgatatgaaggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgttttttgac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3947514 |
acacatttgttcttcacaggtgtagaatcatttgacattgatatgaaggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgttttt-gac |
3947416 |
T |
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| Q |
117 |
actgtttccaaaactggaaagaaaactgaattctgggtagaacctgaaaacaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3947415 |
actgtttccaaaactggaaagaaaactgaattctgggtagaacctgaaaacaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcag |
3947316 |
T |
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| Q |
217 |
aagctgtaactattgaccctgttgagcctgataacaaaccttctgaaactgccacagctgtctctattgagcctgagaacaaaccttctgaaactg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3947315 |
aagctgtaactattgaccctgttgagcctgataacaaaccttctgaaactgccacagttgtctctattgagcctgagaacaaaccttctgaaactg |
3947220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 3947249 - 3947216
Alignment:
| Q |
238 |
ttgagcctgataacaaaccttctgaaactgccac |
271 |
Q |
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| T |
3947249 |
ttgagcctgagaacaaaccttctgaaactgccac |
3947216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 18602759 - 18602683
Alignment:
| Q |
33 |
caggtgtagaatcatttgacattgatatgaaggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtt |
109 |
Q |
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|||||||| ||||| |||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
18602759 |
caggtgtataatcagttgacattgatatggaggaacaaaaggtgactgttaaaggaaatgtaaacccacaagatgtt |
18602683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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