View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_17 (Length: 313)
Name: NF4142_low_17
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 1104750 - 1104466
Alignment:
| Q |
14 |
cacatttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaaca |
113 |
Q |
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| T |
1104750 |
cacatttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaaca |
1104651 |
T |
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| Q |
114 |
accactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatca |
213 |
Q |
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| T |
1104650 |
accactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatca |
1104551 |
T |
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| Q |
214 |
acccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgc |
298 |
Q |
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| T |
1104550 |
acccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgc |
1104466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 1047721 - 1047433
Alignment:
| Q |
16 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
115 |
Q |
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| T |
1047721 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaaccatatagaacaac |
1047622 |
T |
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| Q |
116 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaac |
215 |
Q |
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| T |
1047621 |
cactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtcatattagcatcaac |
1047522 |
T |
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| Q |
216 |
ccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcatttgc |
304 |
Q |
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| T |
1047521 |
ccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgc |
1047433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 1072531 - 1072254
Alignment:
| Q |
16 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
115 |
Q |
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| T |
1072531 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacatc |
1072432 |
T |
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| Q |
116 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaac |
215 |
Q |
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| T |
1072431 |
cactaccatcactc---acatttaagtttgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaac |
1072335 |
T |
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| Q |
216 |
ccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttc |
296 |
Q |
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| T |
1072334 |
ccaagtatgtgttgtatctggcaatttcaatccagaaaatgttctaaaacgatcattcacaccacaattccatgtttcttc |
1072254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 1088195 - 1087930
Alignment:
| Q |
16 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
115 |
Q |
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||||||||||||||||||||||||||||||| ||| |||| |||||| | |||||||| |||||||| | |||||||||||||||||||||||||||| |
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| T |
1088195 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaac |
1088096 |
T |
|
| Q |
116 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaac |
215 |
Q |
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| T |
1088095 |
cactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatatttgcatcaac |
1087996 |
T |
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| Q |
216 |
ccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccaca |
281 |
Q |
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| T |
1087995 |
ccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaactatcattcactccaca |
1087930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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