View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4142_low_18 (Length: 305)

Name: NF4142_low_18
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4142_low_18
NF4142_low_18
[»] chr6 (2 HSPs)
chr6 (1-269)||(29010866-29011122)
chr6 (121-289)||(28248928-28249095)
[»] chr5 (3 HSPs)
chr5 (29-289)||(14233883-14234144)
chr5 (29-187)||(31000575-31000733)
chr5 (80-122)||(40905518-40905560)
[»] chr4 (10 HSPs)
chr4 (120-276)||(9238300-9238456)
chr4 (120-300)||(26905085-26905265)
chr4 (33-286)||(9881060-9881316)
chr4 (137-289)||(5706937-5707089)
chr4 (1-80)||(32347608-32347686)
chr4 (1-69)||(28964840-28964908)
chr4 (120-216)||(50935447-50935542)
chr4 (29-64)||(7043414-7043449)
chr4 (12-79)||(11494105-11494172)
chr4 (81-122)||(28965279-28965320)
[»] chr2 (5 HSPs)
chr2 (121-289)||(302106-302273)
chr2 (156-286)||(3461556-3461686)
chr2 (1-122)||(12635117-12635238)
chr2 (124-274)||(38099360-38099510)
chr2 (120-273)||(39190845-39190997)
[»] chr8 (3 HSPs)
chr8 (121-289)||(37786822-37786989)
chr8 (131-300)||(6414359-6414528)
chr8 (1-69)||(9487816-9487883)
[»] chr3 (2 HSPs)
chr3 (1-172)||(1663200-1663379)
chr3 (137-289)||(18641184-18641336)
[»] scaffold0038 (1 HSPs)
scaffold0038 (121-289)||(49090-49257)
[»] chr7 (3 HSPs)
chr7 (137-289)||(30380420-30380571)
chr7 (156-289)||(35898377-35898510)
chr7 (120-289)||(296841-297010)
[»] chr1 (2 HSPs)
chr1 (156-289)||(50778359-50778492)
chr1 (1-127)||(51119415-51119544)
[»] scaffold1064 (1 HSPs)
scaffold1064 (120-258)||(2275-2413)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-65)||(59518-59581)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 29010866 - 29011122
Alignment:
Q  1 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttgctaaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  29010866 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaa------------caaattttctaactaacttgctaaatg 29010953  T
Q  101 gcaggtatggattaaatcttaatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttc 200  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||    
T  29010954 gcagttatggattaaatcttaatactccatcttaattcataactgttgaatactgaaaacaccaagtttcttcctaaaaaacttaaatttgtcaagtttc 29011053  T
Q  201 aaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagctcaaccattccatta 269  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  29011054 aaagctttagtaaaaccatatgcaagttgcagttctgtaggacaaaactgcagctcaaccattccatta 29011122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 289
Target Start/End: Complemental strand, 28249095 - 28248928
Alignment:
Q  121 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 220  Q
    ||||||||| |||||| |||||||  |||||| | | |||||| | |||||| ||||  || |||||||||||||| ||||  ||||| ||||||||||     
T  28249095 aatactcccccttaat-cataactactgaatattaagaacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatc 28248997  T
Q  221 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
     |||||||| | ||||||||| || || |||| ||||| ||||||||||||||| | ||||||||||||    
T  28248996 agcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcacatgctctctaatgaa 28248928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 289
Target Start/End: Complemental strand, 14234144 - 14233883
Alignment:
Q  29 cttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttgctaaa-tggcaggtatggattaaatcttaatactc 127  Q
    ||||||||| | ||||||||  || ||||||||| | |||| ||||||||| | ||||||||| ||| |  |||||| |||| ||||  |||||| ||||    
T  14234144 cttgcttgttgaacaagctaattccctaactaactagttttgtaacaaattct-taactaactagcttaggtggcagttatgaattatttcttaacactc 14234046  T
Q  128 cctcttaattcataactgttgaatactgaaaa-caccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaag 226  Q
    ||  ||||||| |||||| |||| | |||||| ||||||||||||| || | ||| |||||| |||||||||| |  || ||||||||||||| ||||||    
T  14234045 ccctttaattcttaactgctgaacattgaaaaacaccaagtttcttcctaaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgcaag 14233946  T
Q  227 ttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
    |||||  || ||||||||||| |||| ||||| ||||||||||||||||| ||| ||||||||    
T  14233945 ttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaa 14233883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 31000733 - 31000575
Alignment:
Q  29 cttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaactt-gctaaatggcaggtatggattaaat-cttaatact 126  Q
    ||||||||||| |||||||| || || |||||||||| |||  |||||| |  ||||||||||| | || | ||||| |||| |||||   ||||| |||    
T  31000733 cttgcttgtagaacaagctagctaaccaactaacaaactttgaaacaaaat--ctaactaactttgttacaaggcagttatgtattaatcacttaacact 31000636  T
Q  127 ccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaa 187  Q
    ||| ||||||||||||||| |||||  | |||||| |||||||||| |||| ||| |||||    
T  31000635 cccccttaattcataactgctgaatgttaaaaacatcaagtttcttcctcaaaaattcaaa 31000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 40905560 - 40905518
Alignment:
Q  80 ttctaactaacttgctaaatggcaggtatggattaaatcttaa 122  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  40905560 ttctaactaacttgctacatggcagttatagattaaatcttaa 40905518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 276
Target Start/End: Original strand, 9238300 - 9238456
Alignment:
Q  120 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 219  Q
    ||||||| || ||||||||||||||| |||||  | | |||||||||||| || |||| ||| |||||| ||||||| |||||||  || ||||| ||||    
T  9238300 taatacttccccttaattcataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctttgtaaagccat 9238399  T
Q  220 atgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacct 276  Q
     |||||| ||||||| ||| ||||||||||||| ||||| ||| |||||||||||||    
T  9238400 ctgcaagctgcaattatgtaggacaatactgcaactcaatcataccattagtcacct 9238456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 300
Target Start/End: Complemental strand, 26905265 - 26905085
Alignment:
Q  120 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 219  Q
    ||||||||||  |||||||||||||| | |||| | | ||||||||||||||| || | ||| | |||||||||||| |||||||| || ||||| |||     
T  26905265 taatactccccattaattcataactgctaaatattaacaacaccaagtttcttccttaaaaatttaaatttgtcaagcttcaaagcctttgtaaagccac 26905166  T
Q  220 atgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaagtataatctag 300  Q
    ||||||| |||| |||| | |||||||| || ||||||| |||| ||||| ||| || ||| | ||||||||  |||||||    
T  26905165 atgcaagctgcagttctataggacaataatgtagctcaatcatttcattattcatctgctccccaatgaagtggaatctag 26905085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 286
Target Start/End: Complemental strand, 9881316 - 9881060
Alignment:
Q  33 cttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttg-ctaaatggcaggtatggattaaatcttaatactccctc 131  Q
    ||||||| |||||||| |||  |||||||| | |||| ||||||||| || |||||||||| |||  || ||| |||| ||||  |||||| |||||| |    
T  9881316 cttgtagaacaagctaactccataactaactagttttgtaacaaattctc-aactaacttgtctacgtgacagttatgaattatttcttaacactccccc 9881218  T
Q  132 ttaattcataactgttgaatactgaaaa--caccaagtttctttctcacaaactcaaattt-gtcaagtttcaaa-gctttagtaaaaccatatgcaagt 227  Q
    ||||||   || ||||||| | ||||||  ||||||||||||| |||| ||| |||||||| |||||||||  |  || ||||||||||||| |||||||    
T  9881217 ttaatttg-aattgttgaacattgaaaaaacaccaagtttcttcctcaaaaattcaaattttgtcaagtttttactgccttagtaaaaccatctgcaagt 9881119  T
Q  228 tgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaat 286  Q
    ||||| || ||||||||||| |||| ||||  |||||||||||||| || ||| |||||    
T  9881118 tgcaactcagtgggacaatattgcacctcattcattccattagtcatctgctccctaat 9881060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 5707089 - 5706937
Alignment:
Q  137 tcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattct 236  Q
    ||||||||| |||||| | || ||||  | |||||| |||||||| |||||||||||||| ||||  || || ||||| ||||  |||||||| | ||||    
T  5707089 tcataactgctgaatattaaatacacttaatttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttct 5706990  T
Q  237 gtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
    ||||| || || |||||||||| ||||||||||||||| | ||| ||||||||    
T  5706989 gtggggcagtagtgcagctcaatcattccattagtcacttgctccctaatgaa 5706937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32347608 - 32347686
Alignment:
Q  1 acaaagccttttataggca-aatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattt 80  Q
    ||||||||||||||||||| ||||| |  ||||||||||| ||||||||||| |||||||||||||||||  |||||||||    
T  32347608 acaaagccttttataggcacaatatca--cttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaattt 32347686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28964840 - 28964908
Alignment:
Q  1 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaatttt 69  Q
    ||||||||||||||| |||||||  |  ||||||||||| ||||||||||| |||||| ||||||||||    
T  28964840 acaaagccttttataagcaaatacaacacttgcttgtagtacaagctatctaactaacaaacaaatttt 28964908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 50935542 - 50935447
Alignment:
Q  120 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaac 216  Q
    |||||||||| |||||| ||||||||||||||| | || ||||| | |||||||||||  ||||||||| ||||||| ||||  ||||| |||||||    
T  50935542 taatactcccccttaat-cataactgttgaatattaaagacacctactttctttctcaggaactcaaatatgtcaagcttcactgcttttgtaaaac 50935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 7043414 - 7043449
Alignment:
Q  29 cttgcttgtagcacaagctatctcactaactaacaa 64  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7043414 cttgcttgtagcacaagctatctaactaactaacaa 7043449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 11494172 - 11494105
Alignment:
Q  12 tataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaatt 79  Q
    ||||||||||  | || |||||||||||||||| ||||||||| ||||||| | |||| |||||||||    
T  11494172 tataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttgtaacaaatt 11494105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 28965279 - 28965320
Alignment:
Q  81 tctaactaacttgctaaatggcaggtatggattaaatcttaa 122  Q
    |||||||||||||||| ||||||  |||||||||||||||||    
T  28965279 tctaactaacttgctacatggcaattatggattaaatcttaa 28965320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 289
Target Start/End: Complemental strand, 302273 - 302106
Alignment:
Q  121 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 220  Q
    ||||||||| |||||| ||||||||||||||| | |||||||| | |||||| ||||  || |||||| ||||||| ||||  ||||| ||||||||||     
T  302273 aatactcccccttaat-cataactgttgaatattaaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcattgcttttgtaaaaccatc 302175  T
Q  221 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
     |||||||| | || |||||| || || |||||||||| ||||||||||||||||| ||||| ||||||    
T  302174 agcaagttgtagttttgtggggcagtagtgcagctcaatcattccattagtcacctgctctcaaatgaa 302106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 3461686 - 3461556
Alignment:
Q  156 aaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagct 255  Q
    ||||||||||||| ||||||||  || |||||| ||||||| || |  || || ||||||||||  |||||||||| ||||||||| ||||| |||||||    
T  3461686 aaaacaccaagttcctttctcaagaattcaaatatgtcaagctttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagct 3461587  T
Q  256 caaccattccattagtcacctactctctaat 286  Q
    ||| ||||||||||||||| | |||||||||    
T  3461586 caatcattccattagtcacatgctctctaat 3461556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 12635238 - 12635117
Alignment:
Q  1 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttgctaaatg 100  Q
    ||||||||||||||||| |||||| |  ||||||||||||| ||| |||||||||||||||||| |||| ||| |||  ||||||| |||||||||  ||    
T  12635238 acaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaaccaacttgctatgtg 12635139  T
Q  101 gcaggtatggattaaatcttaa 122  Q
    |||| |||| ||||| ||||||    
T  12635138 gcagttatgtattaactcttaa 12635117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 274
Target Start/End: Original strand, 38099360 - 38099510
Alignment:
Q  124 actccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgc 223  Q
    |||||| |||||||||||| || |||||  | | ||||||||||||||| |||| ||| |||||| || |||| |||||||| || ||||| ||||||||    
T  38099360 actcccccttaattcataattgctgaatgttaacaacaccaagtttcttcctcaaaaattcaaatatgccaagcttcaaagcctttgtaaagccatatgc 38099459  T
Q  224 aagttgcaattctgtgggacaatactgcagctcaaccattccattagtcac 274  Q
     || | ||||||||| |||||||| || || |||| ||| |||||||||||    
T  38099460 tagctacaattctgtaggacaatattgtagttcaatcataccattagtcac 38099510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 39190845 - 39190997
Alignment:
Q  120 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 219  Q
    |||||||||| |||||| |||||||| || ||| | |||||||| | |||||| ||||  || |||||| ||||||| ||||  ||||| | ||||||||    
T  39190845 taatactcccccttaat-cataactgctgcatattaaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcactgcttttgcaaaaccat 39190943  T
Q  220 atgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtca 273  Q
      |||||||||| ||||||||| || || |||||||||| ||||||||||||||    
T  39190944 cagcaagttgcagttctgtggggcagtagtgcagctcaatcattccattagtca 39190997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 289
Target Start/End: Original strand, 37786822 - 37786989
Alignment:
Q  121 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 220  Q
    ||||||||| |||||| |||||||| |||||| | |||||||| | ||| || ||||  || |||||| ||||||| ||||  ||||| ||||||||||     
T  37786822 aatactcccccttaat-cataactgctgaatattaaaaacacctaatttattcctcaagaattcaaatctgtcaagcttcactgcttttgtaaaaccatc 37786920  T
Q  221 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
     |||||||| | ||||||||| || || |||||||||| ||||||||||||||| | ||||||||||||    
T  37786921 agcaagttgtagttctgtggggcagtagtgcagctcaatcattccattagtcacttgctctctaatgaa 37786989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 6414528 - 6414359
Alignment:
Q  131 cttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgc 230  Q
    ||||||| ||||||| |||||  | | |||| |||||||||| |||| ||  | |||| | ||||| |||||||| || |||||||||| |||||| |||    
T  6414528 cttaattaataactgctgaatgttaacaacaacaagtttcttcctcaaaagtttaaatctatcaagcttcaaagcctttgtaaaaccatctgcaagctgc 6414429  T
Q  231 aattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaagtataatctag 300  Q
    |||||||| ||||| || |||| ||||| || |||||||||||||| ||| |||||||| || |||||||    
T  6414428 aattctgtaggacagtaatgcaactcaatcactccattagtcacctgctccctaatgaaatagaatctag 6414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9487883 - 9487816
Alignment:
Q  1 acaaagccttttataggca-aatatgatgcttgcttgtagcacaagctatctcactaactaacaaatttt 69  Q
    |||||||||||||||| || ||||| |  ||||||||||| ||||||||||| |||||||||||||||||    
T  9487883 acaaagccttttatagacacaatatta--cttgcttgtagaacaagctatctaactaactaacaaatttt 9487816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 1663379 - 1663200
Alignment:
Q  1 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaa--------ttttctaacaaattttctaactaactt 92  Q
    |||||| |||| |||||||||||| |  |||| |||||||||||||||||| |||||| ||| ||        |||| ||||||| || |||||||||||    
T  1663379 acaaagactttcataggcaaatataacacttgtttgtagcacaagctatctaactaacaaactaactaagaagttttgtaacaaaatt-ctaactaactt 1663281  T
Q  93 gctaaatggcaggtatggattaaatcttaatactccctcttaattcataactgttgaatactga-aaacaccaagtttctt 172  Q
    |||| ||||||| |||||||||||||||||  ||| | ||||||||||||||| |||||  ||| ||||||||||||||||    
T  1663280 gctacatggcagttatggattaaatcttaacgctcgcccttaattcataactgctgaatgttgagaaacaccaagtttctt 1663200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 18641184 - 18641336
Alignment:
Q  137 tcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattct 236  Q
    ||||||||| |||||| | || ||||  | |||||| |||||||| |||||||||||||| ||||  || || ||||| ||||  |||||||| | ||||    
T  18641184 tcataactgctgaatattaaatacacttaatttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttct 18641283  T
Q  237 gtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
    ||||| || || |||||||||| ||||||||||||||| | ||| ||||||||    
T  18641284 gtggggcagtagtgcagctcaatcattccattagtcacttgctccctaatgaa 18641336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 289
Target Start/End: Complemental strand, 49257 - 49090
Alignment:
Q  121 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 220  Q
    ||||||||| |||||| |||||||  |||||| | | |||||| | |||||| ||||  || |||||||||||||| ||||  ||||| ||||||||||     
T  49257 aatactcccccttaat-cataactactgaatattaagaacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatc 49159  T
Q  221 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
     |||||||| | ||||||||| || || |||| ||||| ||||||||||||||| | ||||||||||||    
T  49158 agcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcacatgctctctaatgaa 49090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 30380571 - 30380420
Alignment:
Q  137 tcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattct 236  Q
    |||||||||||||| |   |||||||||||||| || |||| ||| | |||| ||||||| ||||  ||||| ||||| |||||||||||||||| ||||    
T  30380571 tcataactgttgaacatcaaaaacaccaagttttttcctcaaaaattaaaatatgtcaagcttcactgcttttgtaaa-ccatatgcaagttgcagttct 30380473  T
Q  237 gtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
    || | | | || || ||||||| ||||||||||||||||| ||||||||||||    
T  30380472 gttgtatagtagtgtagctcaatcattccattagtcacctgctctctaatgaa 30380420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 35898510 - 35898377
Alignment:
Q  156 aaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagct 255  Q
    ||||||||||||| ||| ||||  || |||||| ||||||  ||||  || ||  |||| ||||| |||||||||| ||| ||||  ||||| |||||||    
T  35898510 aaaacaccaagttccttcctcaagaattcaaatctgtcaaacttcactgcctttttaaagccataagcaagttgcagttccgtggagcaatagtgcagct 35898411  T
Q  256 caaccattccattagtcacctactctctaatgaa 289  Q
    ||| ||||||||||||||||| ||||||||||||    
T  35898410 caatcattccattagtcacctgctctctaatgaa 35898377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 297010 - 296841
Alignment:
Q  120 taatactccctcttaattcataactgttgaatactgaaaa-caccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaacca 218  Q
    |||||||||| |||||| |||||||| |||||| | |||| |||| | |||||| ||||  || |||||| ||||||| |||   ||||| |||||||||    
T  297010 taatactcccccttaat-cataactgctgaatattaaaaaacacctaatttcttcctcaagaattcaaatgtgtcaagcttcgctgcttttgtaaaacca 296912  T
Q  219 tatgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctctaatgaa 289  Q
    |   ||||||| | ||||||||| || || |||| ||| | ||||||||||||||||| ||| ||||||||    
T  296911 tcaacaagttgtagttctgtggggcagtagtgcaactctatcattccattagtcacctgctccctaatgaa 296841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 50778359 - 50778492
Alignment:
Q  156 aaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagct 255  Q
    ||||||||||||| ||| || | ||| |||||| ||||||| || |  || || ||||| ||||  |||||||||| ||||||||| ||||| |||||||    
T  50778359 aaaacaccaagttccttcctaaaaaattcaaatctgtcaagctttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagct 50778458  T
Q  256 caaccattccattagtcacctactctctaatgaa 289  Q
    ||| ||||| ||||||||||| ||||||||||||    
T  50778459 caatcattcaattagtcacctgctctctaatgaa 50778492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 51119544 - 51119415
Alignment:
Q  1 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaa----ttttctaacaaattttctaactaacttgcta 96  Q
    ||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||| ||    |||| |||||||  |||||||||||||| ||    
T  51119544 acaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaactaacacgttttgtaacaaa-attctaactaacttgtta 51119446  T
Q  97 aatggcaggtatggattaaatcttaatactc 127  Q
     |||| || |||| |||||||||||| ||||    
T  51119445 catgggagttatgaattaaatcttaacactc 51119415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 2275 - 2413
Alignment:
Q  120 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 219  Q
    |||||||||| ||||||||||||||| | |||  | | |||||||||||| || |||| ||| | |||| | ||||| |||||||  || ||||| ||||    
T  2275 taatactcccccttaattcataactgcttaatgttcacaacaccaagttttttcctcaaaaattaaaatatttcaagcttcaaagtctttgtaaagccat 2374  T
Q  220 atgcaagttgcaattctgtgggacaatactgcagctcaa 258  Q
     |||||| ||||||| ||| ||||||||||||| |||||    
T  2375 ctgcaagctgcaattatgtaggacaatactgcaactcaa 2413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 59518 - 59581
Alignment:
Q  1 acaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaa 65  Q
    ||||||||||||||||||| | |||   ||||||||||| ||||||||| | |||||||||||||    
T  59518 acaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaacaaa 59581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University