View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_22 (Length: 281)
Name: NF4142_low_22
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 29612129 - 29611902
Alignment:
| Q |
43 |
cttgaaaaagcagggaacgaatgtgtgtaggggtgcagttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgt |
142 |
Q |
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| T |
29612129 |
cttgaaaaagcagggaacgaatctgtgtagtagtgcagttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgttt |
29612032 |
T |
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| Q |
143 |
aggtagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattc |
242 |
Q |
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| T |
29612031 |
aggtagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgtatcatattc |
29611932 |
T |
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| Q |
243 |
tttggtctattaattccatataattcatct |
272 |
Q |
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| T |
29611931 |
tttggtctattaattccatataattcatct |
29611902 |
T |
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Back To:
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 38467139 - 38467228
Alignment:
| Q |
155 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
244 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattctt |
38467228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 17236659 - 17236561
Alignment:
| Q |
146 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
244 |
Q |
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| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaaggtatatcttactctaatcgtatcatattctt |
17236561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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