View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_25 (Length: 277)
Name: NF4142_low_25
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 4798431 - 4798531
Alignment:
| Q |
15 |
tcatcaaagacattttcaccacttaattttcagcaacaaagtaaagatacattctgacaacctctttctttaagaataagccggagagatacatatccac |
114 |
Q |
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| T |
4798431 |
tcatcaaagacattttcaccacttaattttcagcaacaaagtaaagatacattctgacaacctctttctttaagtataagccggagagatacatatccac |
4798530 |
T |
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| Q |
115 |
g |
115 |
Q |
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| T |
4798531 |
g |
4798531 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 4798574 - 4798658
Alignment:
| Q |
167 |
gattgattgcacgtgttttttcatatccacgtattcccttcaattannnnnnnaaatgattttgtaacatccataatggtcatat |
251 |
Q |
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| T |
4798574 |
gattgattgcacgtgttttttcatatccacgtattcccttcaattatttttttaaatgattttgtaacatccataatggtcatat |
4798658 |
T |
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