View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4142_low_3 (Length: 547)
Name: NF4142_low_3
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 51976954 - 51976427
Alignment:
| Q |
1 |
tatctccatcccttcaatcgcttgctcacgattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgct |
100 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51976954 |
tatctccatccctttaatagcttgctcacgattctcaataaagaatcttggagaaatttcgttgtccatcaggctttgaagcagtggaatatcatttgct |
51976855 |
T |
|
| Q |
101 |
tcagaaaatgatattgcaattagggaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaacggcaatgtcattgatcaaattaatag |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976854 |
tcagaagatgatattgcaattagggaagtgttattgttgttcgtaagacaagtgagacaaatcattgattcaacggcaatgtcattgatcaaattaatag |
51976755 |
T |
|
| Q |
201 |
gcgaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaag |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976754 |
gcgaagacacaatccttacgataacattacgaaaaccaactttttccaaccacagccacatagcaagcaatcgcatggagtcggagggatcacgagaaag |
51976655 |
T |
|
| Q |
301 |
attagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaagg |
400 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51976654 |
attagtgacaaggattttgtacagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaagg |
51976555 |
T |
|
| Q |
401 |
aaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaagagtcacaactattggtgatatgagacatgttcacgcatc |
500 |
Q |
| |
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| T |
51976554 |
aaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaagagtcacaactattggtgatatgagacatgttcacgcatc |
51976455 |
T |
|
| Q |
501 |
aagagacgtgttttttgagtgagttcgt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
51976454 |
aagagacgtgttttttgagtgagttcgt |
51976427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 27 - 460
Target Start/End: Complemental strand, 51972504 - 51972072
Alignment:
| Q |
27 |
cacgattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaattaggga |
126 |
Q |
| |
|
||||||||| || ||||||| | | || ||||| || ||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||| || |
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|
| T |
51972504 |
cacgattctgaagaaagaatttcagcgagatttccttttccattaggctttgaagaagtggaatatcatttgcttcataagatgacattgcaattacaga |
51972405 |
T |
|
| Q |
127 |
agtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataaca |
226 |
Q |
| |
|
|| ||| |||||||| ||||||||| ||||| | |||||||||||| | |||| |||||||||||| | |||||| |||||| ||| ||| | ||| |
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| T |
51972404 |
agcgttgttgttgttggtaagacaactgagacatatcattgattcatcaacaatttcattgatcaaaatgataggcaaagacataatgtttttcacaacg |
51972305 |
T |
|
| Q |
227 |
ttacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagtt |
326 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||| || ||||||||||||||||| || | |
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| T |
51972304 |
ttaggaaaaccaactttttccagccaaagccacatagcaagcaatcgcatggactcagatggatcacgagaaaggttggtgacaaggattttgtagaggt |
51972205 |
T |
|
| Q |
327 |
ctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaat |
426 |
Q |
| |
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||||||||||||| ||||||| ||||| ||| ||| ||| ||| ||| |||||||||||| |||| | |||||||||||||||||||| |||||| || |
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| T |
51972204 |
ctctgtccatttgatggaacataagaaaatcctct-tgaggaacggtggaagaaagtggaggatccatggaaggaaacatgaaacaatgttatgtttgat |
51972106 |
T |
|
| Q |
427 |
tcgggaaagttggtaatgtataaatagtagtgaa |
460 |
Q |
| |
|
| |||||| |||||||||| |||||||||||||| |
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|
| T |
51972105 |
ttgggaaacttggtaatgtttaaatagtagtgaa |
51972072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 51 - 460
Target Start/End: Original strand, 17726621 - 17727032
Alignment:
| Q |
51 |
gagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatga---tattgcaattagggaagtgttattgttgttcgtaag |
147 |
Q |
| |
|
|||| ||||| || ||||||| ||| ||||| |||||||||||||||||||||||| || | ||||| | ||||||| |||||| ||||||| ||||| |
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| T |
17726621 |
gagagatttcattttccattacgctctgaagaagtggaatatcatttgcttcagaagataacattattgtagttagggaggtgttactgttgttggtaag |
17726720 |
T |
|
| Q |
148 |
acaagtgagaaaaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataacattacgaaaaccaactttttcc |
247 |
Q |
| |
|
||| |||||| | | ||||| |||| | ||||| |||||||||||| |||||||| |||||| ||| ||| | ||| ||| ||||||||||||||||| |
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|
| T |
17726721 |
acatgtgagacatagcattgtttcatcagcaatctcattgatcaaaataataggcaaagacataatatttttcacaacgttatgaaaaccaactttttcc |
17726820 |
T |
|
| Q |
248 |
aaccaaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagttctctgtccatttggtggaaca |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||| || ||||| |||| ||||||||||| |
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|
| T |
17726821 |
aaccaaagccacatagcaagcaatcgcatggactcggatggatcacgagaaagttctgtgacaaggattttgtagaggtctctatccacttggtggaaca |
17726920 |
T |
|
| Q |
348 |
gaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtat |
447 |
Q |
| |
|
|||||| ||| ||| ||| ||| |||||||||||||||| |||| | |||||||| ||||||||||||||||||||||| || ||| ||| ||| || | |
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|
| T |
17726921 |
gaagaaaatcctct-tgaggaacggtgaaagaaagtggaggatccatggaaggaaaaatgaaacaatgctatgttcaatttggaaaacttgataacgttt |
17727019 |
T |
|
| Q |
448 |
aaatagtagtgaa |
460 |
Q |
| |
|
|||||||| |||| |
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|
| T |
17727020 |
aaatagtaatgaa |
17727032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 3 - 455
Target Start/End: Original strand, 17711692 - 17712143
Alignment:
| Q |
3 |
tctccatcccttcaatcgcttgctcacgattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttc |
102 |
Q |
| |
|
|||||| ||||| ||| |||| | ||||||| | || ||||||| | |||| ||||| || || ||||| |||||||| |||||||||||||||||||| |
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|
| T |
17711692 |
tctccaccccttgaattgcttccacacgattatgaagaaagaatttcagagagatttcattttctattagactttgaagaagtggaatatcatttgcttc |
17711791 |
T |
|
| Q |
103 |
agaaaatgatattgcaattagggaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaacggcaatgtcattgatcaaattaataggc |
202 |
Q |
| |
|
|||| |||| |||| || || |||||||||| |||||| |||||||| |||||| | ||||||||||| | ||||| |||||||||||| |||| ||| |
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|
| T |
17711792 |
agaagatgacattgaaaatacagaagtgttatagttgttggtaagacatgtgagacatgtcattgattcatcagcaatttcattgatcaaaataattggc |
17711891 |
T |
|
| Q |
203 |
gaagacacaatcctttcgataacattacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagat |
302 |
Q |
| |
|
|||||| ||| ||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
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|
| T |
17711892 |
aaagacataatatttttcacaacgttatgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcatggactcggatggatcacgagaaaggt |
17711991 |
T |
|
| Q |
303 |
tagtgacaaggattttgtaaagttctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaa |
402 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||| |||| ||| ||| ||| || |||||||||||||||| |||| | ||||||| |
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|
| T |
17711992 |
ctgtgacaaggattttgtagaggtctctgtccatttggtggatcaggagaaaatcctct-tgaggaatggtgaaagaaagtggaggatccatggaaggaa |
17712090 |
T |
|
| Q |
403 |
acatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagta |
455 |
Q |
| |
|
| |||||| |||| ||||||||||| | |||| | ||||||| ||||||||| |
|
|
| T |
17712091 |
atatgaaataatgttatgttcaatttgagaaactgtgtaatgtttaaatagta |
17712143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 420
Target Start/End: Original strand, 40784107 - 40784499
Alignment:
| Q |
27 |
cacgattctcaataaagaatcttggagaaatttcgttgtccattaggctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaattaggga |
126 |
Q |
| |
|
|||||||||||| ||||||| || |||| ||||| |||||||| ||||||||||| ||||||||||||||| ||||| || ||||| || | ||| |||| |
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|
| T |
40784107 |
cacgattctcaagaaagaattttagagagatttctttgtccatcaggctttgaagaagtggaatatcattttcttcataatatgatttttcgatttggga |
40784206 |
T |
|
| Q |
127 |
agtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaacggcaatgtcattgatcaaattaataggcgaagacacaatcctttcgataaca |
226 |
Q |
| |
|
||||||||||||||| |||| |||| ||||| | |||||||||||||| |||| |||| ||||||| ||| |||| ||||||||||| ||| | |||| |
|
|
| T |
40784207 |
agtgttattgttgttggtaatacaactgagacacatcattgattcaacaacaatttcatcgatcaaaataacaggcaaagacacaatctttttcacaaca |
40784306 |
T |
|
| Q |
227 |
ttacgaaaaccaactttttccaaccaaagccacatagcaagcaatcgcatggagtcggagggatcacgagaaagattagtgacaaggattttgtaaagtt |
326 |
Q |
| |
|
| | ||||||||||| |||||| ||||||||||||||||||||| | || | | |||||||||||||| || ||||||||||| ||||| || | |
|
|
| T |
40784307 |
tcatgaaaaccaactctttccagccaaagccacatagcaagcaactgtgcagacttatatggatcacgagaaaggttggtgacaaggatattgtagaggt |
40784406 |
T |
|
| Q |
327 |
ctctgtccatttggtggaacagaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatg |
420 |
Q |
| |
|
|||||||| || |||||||||||||| ||| ||| | |||| |||||||||||||| || |||| | |||| ||| ||||| |||| ||||| |
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|
| T |
40784407 |
ctctgtccgatttgtggaacagaagaaaatcctct-tgggaaagagtgaaagaaagtgaagtatccatggaagaaaatatgaagcaatactatg |
40784499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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