View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4142_low_30 (Length: 253)
Name: NF4142_low_30
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13503934 - 13503692
Alignment:
| Q |
1 |
ttcatttcatttttcattgtcttttgtgtaattaacctagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503934 |
ttcatttcatttttcacagtcttttgtgtaattaacctagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcat |
13503835 |
T |
|
| Q |
101 |
aagcaccgttctggctcatgatcatcaccatgatcatggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503834 |
aagcaccgttctggctcatgatcatcaccatgatcatggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgct |
13503735 |
T |
|
| Q |
201 |
gcttctcttggttcaatctttggtgcctctatcttctcctttg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503734 |
gcttctcttggttcaatctttggtgcctctatcttctcctttg |
13503692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 1865592 - 1865541
Alignment:
| Q |
192 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctttg |
243 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |||||||||||| |
|
|
| T |
1865592 |
agtgatgctgcttctcctggttcaatccttggtgtctctctcttctcctttg |
1865541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 1865727 - 1865632
Alignment:
| Q |
42 |
actaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
137 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||||||||||| ||||| || | ||||||| ||||| |||| | |||||| ||||| ||||| |
|
|
| T |
1865727 |
actaagtacacaatgaagatgaagattgttgcttttgttgttgtcctcttagccgccataagctccgttatggcacgtgatcactaccatcatcat |
1865632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 1861585 - 1861536
Alignment:
| Q |
192 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctt |
241 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || |||||||||| |
|
|
| T |
1861585 |
agtgatgctgtttcttttggttcaatccttggtgccactctcttctcctt |
1861536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 52500988 - 52501048
Alignment:
| Q |
70 |
ttgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcacca |
130 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| || |||||||||| |||||||||||||| |
|
|
| T |
52500988 |
ttgcttttgttgttgtcctcttagctaccatatgctccgttctggcacatgatcatcacca |
52501048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 52501152 - 52501203
Alignment:
| Q |
192 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctttg |
243 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
52501152 |
agtgatgctgtttatcttggttcaatccttggtgcatctctcttctcctttg |
52501203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University