View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_34 (Length: 249)
Name: NF4142_low_34
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 22621008 - 22620922
Alignment:
| Q |
159 |
gtgtgaacctttcaaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattactccagctatggtcatagtcc |
245 |
Q |
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| T |
22621008 |
gtgtgaacctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcatagtcc |
22620922 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 22621477 - 22621388
Alignment:
| Q |
6 |
gtgagaagaaacacatttaggaaccaaatttgggtttttccaatcttttc--tatgtgtaatagttgctgctattctgtcaaaggaagtc |
93 |
Q |
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| T |
22621477 |
gtgagaagaaacacattcaggaatcgaatttgggctttcccaatcttttctatatgtgtaatagttgctgcttctctgtcaaaggaagtc |
22621388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 31270955 - 31270912
Alignment:
| Q |
179 |
aagaatttgaagcttgggagaatgttggagcacttttgctacat |
222 |
Q |
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| T |
31270955 |
aagaatttgaaacttgggagaatgttggagcaattctgctacat |
31270912 |
T |
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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 15148292 - 15148375
Alignment:
| Q |
162 |
tgaacctttcaaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattactccagctatggtcatagtcc |
245 |
Q |
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| T |
15148292 |
tgaatctttctaattaaaagaatttgaaccttgggagaatgttggagcacttttgctacattacttcagctatggtcatagtcc |
15148375 |
T |
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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 15147605 - 15147693
Alignment:
| Q |
7 |
tgagaagaaacacatttaggaaccaaatttgggtttttccaatcttttc--tatgtgtaatagttgctgctattctgtcaaaggaagtc |
93 |
Q |
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| T |
15147605 |
tgagaagaaacacattaaggaaccaaatttgggttttcccaatcttttctatatgtgtaatagttgctgcttctctggcgaaggaagtc |
15147693 |
T |
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