View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_37 (Length: 242)
Name: NF4142_low_37
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23177965 - 23178190
Alignment:
| Q |
1 |
ataccaagcctggtatgaggaatctaagcaatggatttttctacagtcatcaacgtgtgcgacaaacaattcatgtggannnnnnnccatttgtaatccg |
100 |
Q |
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| T |
23177965 |
ataccaagcctggtatgaggaatctaagcaatggatttttctacggtcatcaacgtgtgtgacaaacaattcatgtggatttttttccatttgtaatccg |
23178064 |
T |
|
| Q |
101 |
caaactcctgacccttgtcaatgtctcagaggttttaaacagtctagtgctggtggatgtgttaggataaagaagttgtcctgcaacaacaataacatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23178065 |
caaactcctgacccttgtcaatgtctcagaggttttaaacagtctagtgctggtggatgtgttaggataaagaagttgtcctgcaacaacaataacatta |
23178164 |
T |
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| Q |
201 |
tacatggatatttctcatcctttaat |
226 |
Q |
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||||||||||||||||||||||||| |
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| T |
23178165 |
aacatggatatttctcatcctttaat |
23178190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 23187097 - 23187175
Alignment:
| Q |
1 |
ataccaagcctggtatgaggaatctaagcaatggatttttctacagtcatcaacgtgtgcgacaaacaattcatgtgga |
79 |
Q |
| |
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|||||||||||||| ||||||| || |||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
23187097 |
ataccaagcctggtccgaggaatataggcaatggatttttctacagttttatcagtgtgtgacaaacaattcatgtgga |
23187175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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