View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_4 (Length: 525)
Name: NF4142_low_4
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 509
Target Start/End: Original strand, 24175261 - 24175761
Alignment:
| Q |
9 |
atcataggagaaggattcaagcgtcagcggaagttatgtttccggcgaagcgtcgttgtacctgtggttgctgtgatgatattgttggggcccgtgttca |
108 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24175261 |
atcatcggagaaggattcaagcgtcagcggaaactatgtttccggcgaagcgtcgttgtacctgtggttgctgtgatgatattgttggggcccgtgttca |
24175360 |
T |
|
| Q |
109 |
tccaacgtgtagtgatgatgatgaaacatataggggtgtgaaaagtgatagtttgggggtgcnnnnnnnnnnnnnnnnnnnnnntgttgtggaattagag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
24175361 |
tccaacgtgtagtgatgatgatgaaacatataggggtgtgaaaagtgatagtttgggggtgcaagaagaagaagaagataaagatgttgtggaattggag |
24175460 |
T |
|
| Q |
209 |
aaggagatgtggaatacgttttatgaaactgggttttggagaagctcttctcagagaaataaagattctttgtctttatcttcttctcaaactgctactc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24175461 |
aaggagatgtggaatacgttttatgaaactgggttttggagaagctcttctcagaggaataaagattctttgtctttatcttcttctcaaactgctactc |
24175560 |
T |
|
| Q |
309 |
caaattttcaggttattattgtaccaaccttgtaatcaaatcaaatgaaatcaatggttgtagtgaaagatgagttaatttggaacttgtatatcgttta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24175561 |
caaattttcaggttattattgtaccaaccttgtaatcaaatcaaatgaaatcaatggttgtagtgaaagatgagttaatttggaacttgtatatcgttta |
24175660 |
T |
|
| Q |
409 |
ttttatatgattaatgcaattttccattttaagagattgatttattcttatttcttacaatttaaaatgcattttgttatcacggcagatatgccagaat |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24175661 |
ttttatatgattaatgcaattttccattttaagagattgatttattcttatttcttacaatttgaaatgcattttgttatcacggcagatatgccagaat |
24175760 |
T |
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| Q |
509 |
c |
509 |
Q |
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| T |
24175761 |
c |
24175761 |
T |
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