View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_41 (Length: 238)
Name: NF4142_low_41
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 6112005 - 6111797
Alignment:
| Q |
18 |
gttctgacttatgcaaaggtgtaaaattcattaagaggcttaaggtttcgaaaattaaagcataacacgcaaggtccccatagccatgtcacnnnnnnng |
117 |
Q |
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| T |
6112005 |
gttcggacttatgaaaaggtgtaaaattcattaagagactcaaggtctccaaaattaaagcataacatgcaaggtccccatagccatgtcacgttttttg |
6111906 |
T |
|
| Q |
118 |
taacattatccctggcttccctatctcttaccaaatagcttgaagttactattgtttatcttattcgagttccattaataaaagactccatatcaaactg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| ||||||||||||||||||| |
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| T |
6111905 |
taacattatgcctggcttccctatctcttaccaaatagcttgaagttactattggttatcttatcctagtcccattaatggaagactccatatcaaactg |
6111806 |
T |
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| Q |
218 |
agtattatc |
226 |
Q |
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| T |
6111805 |
attattatc |
6111797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 6119207 - 6119003
Alignment:
| Q |
18 |
gttctgacttatgcaaaggtgtaaaattcattaagaggcttaaggtttcgaaaattaaagcataacacgcaaggtccccatagccatgtcacnnnnnnng |
117 |
Q |
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||||||||||||| |||| ||||||||||||||||||||| ||||| || |||||||||||||| || |||||||||||||||||||||||| | |
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| T |
6119207 |
gttctgacttatgaaaagatgtaaaattcattaagaggctcaaggtctccaaaattaaagcatatcatgcaaggtccccatagccatgtcacgttttttg |
6119108 |
T |
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| Q |
118 |
taacattatccctggcttccctatctcttaccaaatagcttgaagttactattgtttatcttattcgagttccattaataaaagactccatatcaaactg |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| ||||||||||||||||||| |
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| T |
6119107 |
taacattat----ggcttccctatctcttaccaaatagcttgaagttactattggttatcttatcctagtcccattaatggaagactccatatcaaactg |
6119012 |
T |
|
| Q |
218 |
agtattatc |
226 |
Q |
| |
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||||||||| |
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| T |
6119011 |
agtattatc |
6119003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 6081557 - 6081754
Alignment:
| Q |
18 |
gttctgacttatgcaaaggtgtaaaattcattaagaggcttaaggtttcgaaaattaaagcataacacgcaaggtccccatagccatgtcacnnnnnnng |
117 |
Q |
| |
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||||||||| ||| ||||| |||||||||||||||| || ||||| || |||||||||| ||||||||||||||| | |||| |||||| | |
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| T |
6081557 |
gttctgactaatgtaaaggagtaaaattcattaagatactcaaggtatccaaaattaaagtataacacgcaaggtctctatagttgtgtcactttttttg |
6081656 |
T |
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| Q |
118 |
taacattatccctggcttccctatctcttaccaaatagcttgaagttactattgtttatcttattcgagttccattaataaaagactccatatcaaac |
215 |
Q |
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| T |
6081657 |
tatcattatccatgacttccctatctcttaccaaatagcttgaagttactattgcttgccttattctagtcccactagtggaagactccatctcaaac |
6081754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 19145804 - 19145836
Alignment:
| Q |
22 |
tgacttatgcaaaggtgtaaaattcattaagag |
54 |
Q |
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| T |
19145804 |
tgacttatgcaaaggagtaaaattcattaagag |
19145836 |
T |
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