View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4142_low_46 (Length: 233)
Name: NF4142_low_46
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4142_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1104306 - 1104084
Alignment:
| Q |
1 |
cctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaataagttattgaaaccacactcttgtt |
100 |
Q |
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| T |
1104306 |
cctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaataagttattgaaacattactcttgtt |
1104207 |
T |
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| Q |
101 |
tacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaact |
200 |
Q |
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| T |
1104206 |
tacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaact |
1104107 |
T |
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| Q |
201 |
ccattccaaggaccactcctatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1104106 |
ccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 1087692 - 1087540
Alignment:
| Q |
62 |
tgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttg---tttcgaca |
158 |
Q |
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| T |
1087692 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaaca |
1087593 |
T |
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| Q |
159 |
atttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaagg |
211 |
Q |
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| T |
1087592 |
attgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 1072030 - 1071870
Alignment:
| Q |
63 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
160 |
Q |
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| T |
1072030 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
1071931 |
T |
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| Q |
161 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcct |
220 |
Q |
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| T |
1071930 |
ttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 1047217 - 1047054
Alignment:
| Q |
63 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
160 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| | ||| | ||| | |
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| T |
1047217 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacag |
1047118 |
T |
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| Q |
161 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
223 |
Q |
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|||| |||||| || || || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047117 |
ttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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