View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4142_low_5 (Length: 458)

Name: NF4142_low_5
Description: NF4142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4142_low_5
NF4142_low_5
[»] chr1 (2 HSPs)
chr1 (20-453)||(7644303-7644736)
chr1 (186-260)||(7351904-7351979)
[»] chr8 (1 HSPs)
chr8 (180-410)||(26568336-26568565)
[»] chr4 (3 HSPs)
chr4 (272-407)||(24556875-24557009)
chr4 (203-277)||(28313616-28313690)
chr4 (183-252)||(23998964-23999033)
[»] chr5 (1 HSPs)
chr5 (182-262)||(22876454-22876534)
[»] chr2 (4 HSPs)
chr2 (208-267)||(25056840-25056899)
chr2 (224-260)||(5169282-5169318)
chr2 (224-260)||(45107971-45108007)
chr2 (224-260)||(45109690-45109726)
[»] chr6 (1 HSPs)
chr6 (182-259)||(24633788-24633865)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 7644736 - 7644303
Alignment:
Q  20 aattacaacatgtgagttgttcaatgaaatgtttgaggtagaattttaagagcaagtccaaataagatatagatgaaaatacatcgttcaagattatcta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  7644736 aattacaacatgtgagttgttcaatgaaatgtttgaggtagaattttaagagca-gtccaaataaggtatagatgaaaatacatcgttcaagattatcta 7644638  T
Q  120 ttccttctttggtgcctcctaagtgcccc-ttttatagtcctggatttgttgatatagtcatggatttgttgatttaatgagcatttctttggtcactca 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644637 ttccttctttggtgcctcctaagtgcccccttttatagtcctggatttgttgatatagtcatggatttgttgatttaatgagcatttctttggtcactca 7644538  T
Q  219 tacctattaatttgtgatccagagcctcgcattggttgtctggtacgagaatggtcgcgcttgatctaggctgcaactcatcagtatagaacgtgtaaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644537 tacctattaatttgtgatccagagcctcgcattggttgtctggtacgagaatggtcgcgcttgatctaggctgcaactcatcagtatagaacgtgtaaag 7644438  T
Q  319 ttaagacacgcttttcaaagacggtgatcgtttgtacaagacatgcaaaatcaaagcatgcatattcttgagttgggaccataagtttatctgcacaact 418  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7644437 ttaagacacgcttttcaaagacagtgatcgtttgtacaagacatgcgaaatcagagcatgcatattcttgagttgggaccataagtttatctgcacaact 7644338  T
Q  419 tactttgtggtgagcttggtatacttcatctcact 453  Q
    ||||||||||||||||| ||||||||||| |||||    
T  7644337 tactttgtggtgagcttagtatacttcatatcact 7644303  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 7351904 - 7351979
Alignment:
Q  186 tgttgatttaatgagcatttctttggtcactcata-cctattaatttgtgatccagagcctcgcattggttgtctg 260  Q
    ||||| ||||||| || |||||||| ||| ||| | || ||||| ||||||||||||||||| |||||||||||||    
T  7351904 tgttggtttaatgggcctttctttgatcattcaaagcccattaagttgtgatccagagcctcccattggttgtctg 7351979  T

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Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 180 - 410
Target Start/End: Complemental strand, 26568565 - 26568336
Alignment:
Q  180 tggatttgttgatttaatgagcatttctttggtcactcatacctattaatttgtgatccagagcctcgcattggttgtctggtacgagaatggtcgcgct 279  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||  |||   ||| ||||     
T  26568565 tggatttgttgacttaatgggcatttctttggtcactcagacccattaatttgtgatccaaagcctcccattggttgtctggtttgagtgcggttgcgcg 26568466  T
Q  280 tgatctaggctgcaactcatcagtatagaacgtgtaaagttaagacacgcttttcaaagacggtgatcgtttgtacaagacatgcaaaatcaaagcatgc 379  Q
    |||||||||||||||||| ||  || ||||| ||| |||||||||| ||| ||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  26568465 tgatctaggctgcaactcgtccatacagaacatgtgaagttaagacgcgc-tttcaaagacgttgatcgtttgtacaagacatgtgaaatcaaagcatgc 26568367  T
Q  380 atattcttgagttgggaccataagtttatct 410  Q
    ||||| ||||| | |||||| ||||||||||    
T  26568366 atattattgagctaggaccacaagtttatct 26568336  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 24557009 - 24556875
Alignment:
Q  272 gtcgcgcttgatctaggctgcaactcatcagtatagaacgtgtaaagttaagacacgcttttcaaagacggtgatcgtttgtacaagacatgcaaaatca 371  Q
    ||||||| ||||||| |||||||||| || |||  ||||| || ||||||||||  |||||| ||||||| ||||||||||| ||||||||| | |||||    
T  24557009 gtcgcgcgtgatctaagctgcaactcgtccgtacggaacgcgtgaagttaagacgtgctttt-aaagacgttgatcgtttgtgcaagacatgtagaatca 24556911  T
Q  372 aagcatgcatattcttgagttgggaccataagttta 407  Q
     |||||||||||||||||| |||||||| |||||||    
T  24556910 gagcatgcatattcttgagctgggaccacaagttta 24556875  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 28313690 - 28313616
Alignment:
Q  203 tttctttggtcactcatacctattaatttgtgatccagagcctcgcattggttgtctggtacgagaatggtcgcg 277  Q
    |||||||||| |||||  || ||||  ||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  28313690 tttctttggttactcaagcccattatgttgcgatccagagcctcgcattggttgtctggttcgagtatggtcgcg 28313616  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 23999033 - 23998964
Alignment:
Q  183 atttgttgatttaatgagcatttctttggtcactcatacctattaatttgtgatccagagcctcgcattg 252  Q
    |||||||||||||||| || ||||||||||||| ||  || ||||| ||||||||||||||||| |||||    
T  23999033 atttgttgatttaatgggcctttctttggtcacccaagcccattaagttgtgatccagagcctcccattg 23998964  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 22876534 - 22876454
Alignment:
Q  182 gatttgttgatttaatgagcatttctttggtcactcatacctattaatttgtgatccagagcctcgcattggttgtctggt 262  Q
    ||||||||||||||||| || ||||||||||||||||  || || || |||| | |||||||||| | |||||| ||||||    
T  22876534 gatttgttgatttaatgggcctttctttggtcactcaagcccataaagttgtcaaccagagcctcccgttggttctctggt 22876454  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 25056840 - 25056899
Alignment:
Q  208 ttggtcactcatacctattaatttgtgatccagagcctcgcattggttgtctggtacgag 267  Q
    |||||||||||  || ||||| |||||||| |||||||| ||| ||||||||||||||||    
T  25056840 ttggtcactcaaccccattaagttgtgatcaagagcctctcataggttgtctggtacgag 25056899  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 5169318 - 5169282
Alignment:
Q  224 attaatttgtgatccagagcctcgcattggttgtctg 260  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  5169318 attaagttgtgatccagagcctcccattggttgtctg 5169282  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 45107971 - 45108007
Alignment:
Q  224 attaatttgtgatccagagcctcgcattggttgtctg 260  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  45107971 attaagttgtgatccagagcctcccattggttgtctg 45108007  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 45109690 - 45109726
Alignment:
Q  224 attaatttgtgatccagagcctcgcattggttgtctg 260  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  45109690 attaagttgtgatccagagcctcccattggttgtctg 45109726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 24633788 - 24633865
Alignment:
Q  182 gatttgttgatttaatgagcatttctttggtcactcatacctattaatttgtgatccagagcctcgcattggttgtct 259  Q
    ||||| |||| ||||||| | |||||||||| |||||  || ||||| ||||||| |||||| || ||||||||||||    
T  24633788 gatttattgacttaatgatcctttctttggtaactcaagcccattaagttgtgattcagagcttctcattggttgtct 24633865  T

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