View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4144_high_1 (Length: 296)

Name: NF4144_high_1
Description: NF4144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4144_high_1
NF4144_high_1
[»] chr4 (9 HSPs)
chr4 (15-104)||(47253314-47253405)
chr4 (21-89)||(19809755-19809823)
chr4 (21-89)||(12683839-12683907)
chr4 (23-104)||(19643739-19643822)
chr4 (45-89)||(2674567-2674611)
chr4 (123-182)||(10981772-10981831)
chr4 (21-94)||(29157151-29157224)
chr4 (57-89)||(19818747-19818779)
chr4 (23-71)||(50151775-50151823)
[»] chr3 (12 HSPs)
chr3 (21-92)||(16704453-16704524)
chr3 (24-89)||(9801056-9801121)
chr3 (45-104)||(21342280-21342341)
chr3 (27-104)||(17143724-17143803)
chr3 (29-104)||(28715465-28715542)
chr3 (44-89)||(2311826-2311871)
chr3 (45-87)||(30606984-30607026)
chr3 (123-183)||(2311960-2312020)
chr3 (44-84)||(8122907-8122947)
chr3 (27-83)||(20622468-20622524)
chr3 (21-89)||(28723743-28723811)
chr3 (149-181)||(8123087-8123119)
[»] chr6 (19 HSPs)
chr6 (21-104)||(3404831-3404916)
chr6 (25-94)||(15480314-15480383)
chr6 (24-104)||(20148354-20148434)
chr6 (24-104)||(22184394-22184474)
chr6 (20-89)||(19305518-19305587)
chr6 (21-94)||(34572963-34573036)
chr6 (21-104)||(16131005-16131090)
chr6 (29-88)||(12203615-12203674)
chr6 (24-89)||(14268485-14268551)
chr6 (26-83)||(10115659-10115716)
chr6 (25-89)||(18147360-18147424)
chr6 (22-73)||(9291990-9292041)
chr6 (21-94)||(33596910-33596983)
chr6 (127-183)||(10115808-10115864)
chr6 (44-101)||(30681032-30681091)
chr6 (24-71)||(9277273-9277320)
chr6 (21-88)||(31423806-31423873)
chr6 (44-89)||(22572098-22572143)
chr6 (25-73)||(22692162-22692210)
[»] scaffold0054 (1 HSPs)
scaffold0054 (24-104)||(68774-68854)
[»] chr5 (9 HSPs)
chr5 (31-94)||(34493562-34493625)
chr5 (27-104)||(22903130-22903209)
chr5 (21-89)||(27083207-27083275)
chr5 (21-89)||(20025337-20025405)
chr5 (21-104)||(26994575-26994660)
chr5 (26-104)||(8938949-8939028)
chr5 (44-89)||(25333789-25333834)
chr5 (126-171)||(26163552-26163597)
chr5 (44-89)||(32418478-32418523)
[»] chr1 (14 HSPs)
chr1 (22-89)||(16030449-16030516)
chr1 (24-94)||(22414824-22414894)
chr1 (29-89)||(2140925-2140985)
chr1 (23-103)||(52565618-52565700)
chr1 (21-104)||(5671807-5671892)
chr1 (21-89)||(26977794-26977862)
chr1 (25-104)||(12177423-12177504)
chr1 (44-103)||(34273125-34273186)
chr1 (21-89)||(12032222-12032289)
chr1 (44-104)||(23280254-23280314)
chr1 (114-181)||(5459826-5459892)
chr1 (44-104)||(16050431-16050493)
chr1 (23-73)||(8019018-8019068)
chr1 (46-94)||(33101501-33101549)
[»] chr2 (10 HSPs)
chr2 (21-87)||(3586419-3586485)
chr2 (25-89)||(45258125-45258189)
chr2 (22-88)||(19919036-19919102)
chr2 (26-89)||(36267552-36267615)
chr2 (44-89)||(12169027-12169072)
chr2 (23-89)||(24499843-24499909)
chr2 (123-179)||(27846645-27846701)
chr2 (58-89)||(12127669-12127700)
chr2 (27-89)||(45715049-45715111)
chr2 (126-183)||(12168878-12168935)
[»] scaffold0360 (1 HSPs)
scaffold0360 (25-89)||(13976-14040)
[»] scaffold0023 (1 HSPs)
scaffold0023 (24-104)||(95782-95864)
[»] scaffold0291 (2 HSPs)
scaffold0291 (25-104)||(15403-15484)
scaffold0291 (46-89)||(8571-8614)
[»] chr8 (13 HSPs)
chr8 (23-89)||(30477695-30477761)
chr8 (46-104)||(6928084-6928144)
chr8 (24-89)||(13754812-13754877)
chr8 (45-104)||(24507494-24507555)
chr8 (22-83)||(23497133-23497194)
chr8 (44-89)||(17698277-17698322)
chr8 (24-89)||(18322997-18323062)
chr8 (21-89)||(26916867-26916935)
chr8 (123-182)||(6928202-6928260)
chr8 (57-88)||(7220617-7220648)
chr8 (44-89)||(21416792-21416837)
chr8 (21-89)||(13765043-13765111)
chr8 (44-88)||(17927696-17927740)
[»] chr7 (10 HSPs)
chr7 (44-89)||(26762903-26762948)
chr7 (26-89)||(9135335-9135398)
chr7 (21-89)||(29373500-29373568)
chr7 (21-81)||(43172005-43172065)
chr7 (21-89)||(5863241-5863309)
chr7 (25-89)||(16204345-16204409)
chr7 (22-72)||(13159433-13159481)
chr7 (58-89)||(21161295-21161326)
chr7 (51-88)||(9867938-9867975)
chr7 (25-89)||(16203776-16203840)
[»] scaffold0140 (1 HSPs)
scaffold0140 (22-89)||(6352-6419)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-104)||(120980-121065)
[»] scaffold0174 (1 HSPs)
scaffold0174 (60-93)||(29286-29319)
[»] scaffold0057 (1 HSPs)
scaffold0057 (44-87)||(73794-73837)
[»] scaffold0505 (1 HSPs)
scaffold0505 (59-89)||(7939-7969)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 47253405 - 47253314
Alignment:
Q  15 atcattcgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |  ||||||||| |||||||||    
T  47253405 atcatgcgcgcctatataagggtgacttagcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttcca 47253314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 19809823 - 19809755
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||| ||||| ||| |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  19809823 cgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacac 19809755  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 12683907 - 12683839
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||| |||||| |||  | |||||||||| | |||||||||||||||||||||||||||||||||    
T  12683907 cgcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacac 12683839  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 19643822 - 19643739
Alignment:
Q  23 cgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||||| |||  | | |||||||||| ||||||||||||||||||||| |||||||  ||||||||| |||||||||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttcca 19643739  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 2674567 - 2674611
Alignment:
Q  45 cttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  2674567 cttcatcctcaaggtatgattcacttttcacaacactttctacac 2674611  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 10981831 - 10981772
Alignment:
Q  123 accgtaccggagcacattctgccactgttgcctcttatccatcctcaccggagagatcaa 182  Q
    ||||||| |||||||||||  ||| |||||||||| ||||||||||| |||| |||||||    
T  10981831 accgtactggagcacattccaccattgttgcctctcatccatcctcatcggacagatcaa 10981772  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 29157224 - 29157151
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    ||||||||||||||| |||  |  ||||||| ||| |||||| |||||||| |||||||||| |||||| ||||    
T  29157224 cgcgcctatataagggtgaacttacttcaccatcaaggtatggttcactttacacaacacttactacacacttt 29157151  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 19818779 - 19818747
Alignment:
Q  57 ggtatgattcacttttcacaacactttctacac 89  Q
    ||||| |||||||||||||||||||||||||||    
T  19818779 ggtataattcacttttcacaacactttctacac 19818747  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 50151775 - 50151823
Alignment:
Q  23 cgcctatataaggatgatttagcttcaccctcatggtatgattcacttt 71  Q
    ||||||||||||| ||| || |||||||||||| ||||||||| |||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 16704524 - 16704453
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactct 92  Q
    ||||||||||||||| |||  | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16704524 cgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactct 16704453  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 9801056 - 9801121
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| |||  | |||||||||||| |||||||||||||||||||||||||||||||||    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacac 9801121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 21342280 - 21342341
Alignment:
Q  45 cttcaccctcatggtatgattcacttttcacaacactttc--tacactctttatcagttcca 104  Q
    |||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  21342280 cttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttcca 21342341  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 17143724 - 17143803
Alignment:
Q  27 tatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||| |||| | | ||||||| || |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  17143724 tatataagggtgatgttgtttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttcca 17143803  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 28715465 - 28715542
Alignment:
Q  29 tataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||| |||| | | |||||||||| ||||||||||||||||||||||||||| |  ||||||||| |||||||||    
T  28715465 tataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttcca 28715542  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 2311826 - 2311871
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||    
T  2311826 gcttcaccctcaaggtatgattcacctttcacaacactttctacac 2311871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 30607026 - 30606984
Alignment:
Q  45 cttcaccctcatggtatgattcacttttcacaacactttctac 87  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  30607026 cttcaccctcaaggtataattcacttttcacaacactttctac 30606984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 2311960 - 2312020
Alignment:
Q  123 accgtaccggagcacattctgccactgttgcctcttatccatcctcaccggagagatcaat 183  Q
    ||||||||||||||| ||  ||||||||||||||| |||||| ||||||||| | ||||||    
T  2311960 accgtaccggagcactttgcgccactgttgcctctcatccatactcaccggacatatcaat 2312020  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 8122907 - 8122947
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttc 84  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  8122907 gcttcaccctcaaggtatgattcacttttcacaacgctttc 8122947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 20622524 - 20622468
Alignment:
Q  27 tatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacacttt 83  Q
    ||||||||| |||  | |||||||||||| |||||||||||||||||||| ||||||    
T  20622524 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccacttt 20622468  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 28723743 - 28723811
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||||||||||  | | |||||||||  | || |||||||||||||||||| |||||||||    
T  28723743 cgcgcctatataaggatgacattgtttcaccctccagatacgattcacttttcacaacattttctacac 28723811  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 8123087 - 8123119
Alignment:
Q  149 gttgcctcttatccatcctcaccggagagatca 181  Q
    |||||||||||||||||||||||||| ||||||    
T  8123087 gttgcctcttatccatcctcaccggacagatca 8123119  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 3404831 - 3404916
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||||||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||  ||||||||| |||||||||    
T  3404831 cgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttcca 3404916  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 15480314 - 15480383
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    ||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacacttt 15480383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 20148434 - 20148354
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactctttatcagttcca 104  Q
    |||||||||||| |||  | |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttctacactctttctcaattcca 20148354  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 22184394 - 22184474
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactctttatcagttcca 104  Q
    |||||||||||| |||  | |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttctacactctttctcaattcca 22184474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 19305587 - 19305518
Alignment:
Q  20 tcgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||| ||||| |||  | |||||||||||| |||||||||||||||||||||||||||||||||    
T  19305587 tcgcgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacac 19305518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 34572963 - 34573036
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    ||||||||||||||| ||| ||| |||||||||||  |||||||||||||||||| ||||||||||||| ||||    
T  34572963 cgcgcctatataagggtgacttaacttcaccctcaatgtatgattcacttttcaccacactttctacacacttt 34573036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 16131090 - 16131005
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttc--tacactctttatcagttcca 104  Q
    ||||||||||||||| | |  | | |||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  16131090 cgcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttcca 16131005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 12203615 - 12203674
Alignment:
Q  29 tataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctaca 88  Q
    ||||||| ||| ||| |||||||||||  |||||||||||||||||||||||||||||||    
T  12203615 tataagggtgacttaacttcaccctcaaagtatgattcacttttcacaacactttctaca 12203674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 14268551 - 14268485
Alignment:
Q  24 gcctatataaggatgatttagcttcaccc-tcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| ||| |||||||||||| ||| | |||||||||||||||| ||||||||||||||    
T  14268551 gcctatataagggtgacttagcttcacccctcacgatatgattcacttttcaaaacactttctacac 14268485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 10115659 - 10115716
Alignment:
Q  26 ctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacacttt 83  Q
    |||||||||| ||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaacttt 10115716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 18147424 - 18147360
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||| |||  | |||||||||| | ||||||| |||||||||||||||||||||||||    
T  18147424 cctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacac 18147360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 9291990 - 9292041
Alignment:
Q  22 gcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttc 73  Q
    |||||||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  9291990 gcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc 9292041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 33596983 - 33596910
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    ||||||||||||||  |||  | |||||| ||||| ||||||||||  ||||||||||||||||||||| ||||    
T  33596983 cgcgcctatataagagtgaacttgcttcatcctcaaggtatgattccattttcacaacactttctacacacttt 33596910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 10115808 - 10115864
Alignment:
Q  127 taccggagcacattctgccactgttgcctcttatccatcctcaccggagagatcaat 183  Q
    ||||||| ||||| ||||||| ||||||||| |||| ||||||||||| ||||||||    
T  10115808 taccggaacacatactgccaccgttgcctctcatccgtcctcaccggacagatcaat 10115864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 30681091 - 30681032
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctaca--ctctttatcagtt 101  Q
    |||||| ||||| ||||||||||||||||||||| || |||||||  |||||||||||||    
T  30681091 gcttcatcctcaaggtatgattcacttttcacaatacattctacacgctctttatcagtt 30681032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 9277273 - 9277320
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttt 71  Q
    |||| ||||||| ||| ||||||||||||||| |||||||||||||||    
T  9277273 gcctgtataagggtgagttagcttcaccctcaaggtatgattcacttt 9277320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 31423806 - 31423873
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctaca 88  Q
    ||||||||||||||| ||   | |||||||||||| |  ||||||||||| |||||||||||||||||    
T  31423806 cgcgcctatataagggtgcacttgcttcaccctcaagacatgattcacttctcacaacactttctaca 31423873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 22572143 - 22572098
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| | ||||||||||||| |||||||| ||||||||    
T  22572143 gcttcaccctcaagatatgattcactttacacaacaccttctacac 22572098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 22692210 - 22692162
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttc 73  Q
    ||||||||| | ||| ||||||||||||||| | |||||||||||||||    
T  22692210 cctatataaaggtgacttagcttcaccctcaagttatgattcacttttc 22692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 68774 - 68854
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactctttatcagttcca 104  Q
    |||||||||||| |||  | ||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttctatactctttctcagttcca 68854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 34493625 - 34493562
Alignment:
Q  31 taaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    ||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggtatgattcacttttcacaacactttctacactcttt 34493562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 22903209 - 22903130
Alignment:
Q  27 tatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||| |||| | | |||||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  22903209 tatataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttcca 22903130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 27083207 - 27083275
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||  |||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  27083207 cgcgcctatgcaagggtgacttaacttcaccctcaaggtatgattcacttttcacaacactttctacac 27083275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 20025405 - 20025337
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||| ||||||| |||  |||||||||||||| || |||||||||||| |||||||||||||||||    
T  20025405 cgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacac 20025337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 26994575 - 26994660
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||||||| |||  | ||||||||| || |||||||||||||||||||||||| ||||  ||||||||| ||| |||||    
T  26994575 cgcgcctatataagggtgaccttgcttcacccccaaggtatgattcacttttcacaacaccttctaaacactctttctcaattcca 26994660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 8939028 - 8938949
Alignment:
Q  26 ctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    |||||||| | ||| |||||||||||||||  |||||||||||||||| | ||||||| |  ||||||||| |||||||||    
T  8939028 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc-ccacactttttacacactctttctcagttcca 8938949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 25333834 - 25333789
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  25333834 gcttcactctcaaagtatgattcacttttaacaacactttctacac 25333789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 26163597 - 26163552
Alignment:
Q  126 gtaccggagcacattctgccactgttgcctcttatccatcctcacc 171  Q
    |||| ||||||||||| ||||||||||| ||| |||||||||||||    
T  26163597 gtacgggagcacattccgccactgttgcgtctcatccatcctcacc 26163552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 32418478 - 32418523
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  32418478 gcttcatcctcaaggtatgattcactcttcacaacactctctacac 32418523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 16030516 - 16030449
Alignment:
Q  22 gcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||||| ||  |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  16030516 gcgcctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacac 16030449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 22414894 - 22414824
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    ||||||| ||||||||  | |||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  22414894 gcctatacaaggatgaacttgcttcaccctcaagatatgattcacttttcacaacactttctacacacttt 22414824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 2140925 - 2140985
Alignment:
Q  29 tataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||| ||| ||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  2140925 tataagggtgacttagcttcaccctcaaggtatggttcactttccacaacactttctacac 2140985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 52565700 - 52565618
Alignment:
Q  23 cgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcc 103  Q
    |||| ||||||||||||  | |||||||||||| | |||||||||||||||||||||||||||   |||||||| ||||||||    
T  52565700 cgccaatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcc 52565618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 5671892 - 5671807
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    |||| |||||||||  ||| ||| ||||||| |||  ||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  5671892 cgcgtctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttcca 5671807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 26977862 - 26977794
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||||| | |  | |||||||||||| ||||||||||| ||||||||| |||||||||||    
T  26977862 cgcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacac 26977794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 12177504 - 12177423
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||| |||  | |||||  ||||| ||||| |||||||||||||||||||||||  ||||||||| |||||||||    
T  12177504 cctatataaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactttctacacactctttctcagttcca 12177423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 34273186 - 34273125
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcc 103  Q
    |||||||||||| ||||||| ||||||| |||||||||||||  ||||||||| ||||||||    
T  34273186 gcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttcc 34273125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 12032222 - 12032289
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||||| ||| |||| |||||| ||| | ||||||||| ||| |||||||||||||||||    
T  12032222 cgcgcctatataagggtgacttagtttcacc-tcaagttatgattcattttacacaacactttctacac 12032289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 23280254 - 23280314
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacactctttatcagttcca 104  Q
    ||||||||||||||| || ||||||||||||||||||| |  |||| |||| |||||||||    
T  23280254 gcttcaccctcatggcattattcacttttcacaacactatacacacactttctcagttcca 23280314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 5459826 - 5459892
Alignment:
Q  114 tcatcgccaaccgtaccggagcacattctgccactgttgcctcttatccatcctcaccggagagatca 181  Q
    ||||||||| ||||||| |||||||||| ||||  || |||||| |||||||||||||||| ||||||    
T  5459826 tcatcgcca-ccgtaccagagcacattccgccatcgtcgcctctcatccatcctcaccggatagatca 5459892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 16050493 - 16050431
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    |||||| ||||| |||||| |||||||||||| |||||||||  ||||||||| |||||||||    
T  16050493 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcca 16050431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 8019068 - 8019018
Alignment:
Q  23 cgcctatataaggatgatttagcttcaccctcatggtatgattcacttttc 73  Q
    ||||||||||||| |||  ||||||||||| || |||||||||||||||||    
T  8019068 cgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 33101501 - 33101549
Alignment:
Q  46 ttcaccctcatggtatgattcacttttcacaacactttctacactcttt 94  Q
    |||||||||| | || | |||||||||||||||||||||||||| ||||    
T  33101501 ttcaccctcaagttacggttcacttttcacaacactttctacacacttt 33101549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 3586485 - 3586419
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctac 87  Q
    ||||||||||||||| |||  | |||||||||||| |||||||||||||||||||||||||||||||    
T  3586485 cgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctac 3586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 45258125 - 45258189
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||| ||||    
T  45258125 cctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacac 45258189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 19919036 - 19919102
Alignment:
Q  22 gcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctaca 88  Q
    |||||||||||||  |||| | |||||| ||||| ||||||||||||||||||||||||||||||||    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacactttctaca 19919102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 36267615 - 36267552
Alignment:
Q  26 ctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||| |||  | |||||||||||| |||||||||||||||||||||| ||||||||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacac 36267552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 12169072 - 12169027
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    
T  12169072 gcttcaccctcaaggtataattcacttttcacaacactttctacac 12169027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 24499909 - 24499843
Alignment:
Q  23 cgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||| ||||||| |||  | |||||||||| | ||||||||||||||||||||||| |||||||||    
T  24499909 cgcctttataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacattttctacac 24499843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 27846645 - 27846701
Alignment:
Q  123 accgtaccggagcacattctgccactgttgcctcttatccatcctcaccggagagat 179  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||| ||||| ||||    
T  27846645 accgtaccggaacacattccgtcactgttgcctctcatccatcctctccggacagat 27846701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 12127669 - 12127700
Alignment:
Q  58 gtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||||||||||||||||||||||    
T  12127669 gtatgattcacttttcacaacactttctacac 12127700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 45715111 - 45715049
Alignment:
Q  27 tatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||| |||| ||| ||||||||||| ||| ||||||||||| ||||||| ||||||| |||||    
T  45715111 tatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacactttttacac 45715049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 12168935 - 12168878
Alignment:
Q  126 gtaccggagcacattctgccactgttgcctcttatccatcctcaccggagagatcaat 183  Q
    |||||||||||  ||| ||||||||||||||| ||||||| |||||||| | ||||||    
T  12168935 gtaccggagcattttccgccactgttgcctctcatccatcttcaccggacatatcaat 12168878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 14040 - 13976
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||| |||| | |||||||||||| |||||||||||||| ||||||||||||||||||    
T  14040 cctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacactttctacac 13976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 95782 - 95864
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttcta--cactctttatcagttcca 104  Q
    |||||||||||| |||  | |||||||||| | ||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  95782 gcctatataagggtgacgttgcttcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttcca 95864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 15403 - 15484
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||| |||  | |||||||||||| |||||||||||||||||||||||||||||  | ||||||| |||||||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttcca 15484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 8571 - 8614
Alignment:
Q  46 ttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||| | |||||||||||||||||||||||||||||||||    
T  8571 ttcacccttaaggtatgattcacttttcacaacactttctacac 8614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 30477761 - 30477695
Alignment:
Q  23 cgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||| |||  |  ||||||||||| |||||||||||||||||||||||||||||||||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacac 30477695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 6928084 - 6928144
Alignment:
Q  46 ttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  6928084 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttcca 6928144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 13754877 - 13754812
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||  ||| ||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  13754877 gcctatataagagtgacttagcttcaccctcaaggtaggattcactttacacaacactttctacac 13754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 24507555 - 24507494
Alignment:
Q  45 cttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||||||| ||| |||||    
T  24507555 cttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttcca 24507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 23497133 - 23497194
Alignment:
Q  22 gcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacacttt 83  Q
    |||||||||||||| ||| || |||| ||||||| ||||||||||||| |||||||||||||    
T  23497133 gcgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 17698277 - 17698322
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||    
T  17698277 gcttcaccctcaaagtataattcacttttcacaacactttctacac 17698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 18323062 - 18322997
Alignment:
Q  24 gcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| |||  | |||||| |||||  |||||||||||||||||||||| |||||||||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcacaacattttctacac 18322997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 26916867 - 26916935
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||||||  ||  | ||||||  |||| ||||||| |||||||||||||||||||||||||    
T  26916867 cgcgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttcacaacactttctacac 26916935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 6928202 - 6928260
Alignment:
Q  123 accgtaccggagcacattctgccactgttgcctcttatccatcctcaccggagagatcaa 182  Q
    ||||||||||| ||| ||| ||||||||||||||| ||||||||||||| || |||||||    
T  6928202 accgtaccgga-cactttccgccactgttgcctctcatccatcctcaccagacagatcaa 6928260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 88
Target Start/End: Complemental strand, 7220648 - 7220617
Alignment:
Q  57 ggtatgattcacttttcacaacactttctaca 88  Q
    ||||||||||||||||||||||||||||||||    
T  7220648 ggtatgattcacttttcacaacactttctaca 7220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 21416837 - 21416792
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||| | |||| |||||| |||||||||||||||||||||    
T  21416837 gcttcacccttaaggtacgattcatttttcacaacactttctacac 21416792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 13765111 - 13765043
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||| ||| ||||| ||| ||||||||||| ||| |  || ||||||||| |||||||||||||||||    
T  13765111 cgcgcttatttaagggtgacttagcttcaccttcaagacattattcactttacacaacactttctacac 13765043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 17927696 - 17927740
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctaca 88  Q
    |||||||||| | |||||||||||| ||||| |||||||||||||    
T  17927696 gcttcacccttaaggtatgattcacctttcataacactttctaca 17927740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 26762903 - 26762948
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  26762903 gcttcaccctcaaggtatgattcacttttcacaacactttctacac 26762948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 9135335 - 9135398
Alignment:
Q  26 ctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||| ||| || |||||||||||| ||||||||||||||||||||||| ||| |||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacac 9135398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 29373568 - 29373500
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||| ||| |||  | |||||||||||| ||||||||||| ||||||||||| |||||||||    
T  29373568 cgcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacac 29373500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 43172005 - 43172065
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacact 81  Q
    ||||||||||||||| |||  | ||||||||||||  ||||||||||||||||||||||||    
T  43172005 cgcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 5863309 - 5863241
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    |||||||||| |||| |||  | ||| |||||||| |||||||||||||||| |||||| |||||||||    
T  5863309 cgcgcctatacaagggtgacattgctccaccctcaaggtatgattcactttttacaacattttctacac 5863241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 16204409 - 16204345
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||| ||| ||  ||||||||| | |||||| |||||||||||||||||||| |||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggtatggttcacttttcacaacactttatacac 16204345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 13159481 - 13159433
Alignment:
Q  22 gcgcctatataaggatgatttagcttcaccctcatggtatgattcactttt 72  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  13159481 gcgcctatataagggtgatttagcttcaccctcaagg--tgattcactttt 13159433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 89
Target Start/End: Complemental strand, 21161326 - 21161295
Alignment:
Q  58 gtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||||||||||||||||||||||    
T  21161326 gtatgattcacttttcacaacactttctacac 21161295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 9867938 - 9867975
Alignment:
Q  51 cctcatggtatgattcacttttcacaacactttctaca 88  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  9867938 cctcaaggtatgattcacttttaacaacactttctaca 9867975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 16203840 - 16203776
Alignment:
Q  25 cctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||| ||| ||  ||||||||| | |||||| ||||||||||| |||||||| |||||    
T  16203840 cctatataagggtgacttttcttcacccttaaggtatggttcacttttcataacactttatacac 16203776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 6419 - 6352
Alignment:
Q  22 gcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttctacac 89  Q
    ||||||||||||||||||  | ||||||| |||| |||| || |||||||||||||||||||||||||    
T  6419 gcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacac 6352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 120980 - 121065
Alignment:
Q  21 cgcgcctatataaggatgatttagcttcaccctcatggtatgattcacttttcacaacactttct--acactctttatcagttcca 104  Q
    ||||||||||||||| ||| || |||||||||||| ||||    ||||||||||||||||||| |  ||||||||| |||||||||    
T  120980 cgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttcca 121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 29286 - 29319
Alignment:
Q  60 atgattcacttttcacaacactttctacactctt 93  Q
    ||||||||||||||||||||||||||||||||||    
T  29286 atgattcacttttcacaacactttctacactctt 29319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 73794 - 73837
Alignment:
Q  44 gcttcaccctcatggtatgattcacttttcacaacactttctac 87  Q
    |||||||||| | ||||||||| |||||||||||||||||||||    
T  73794 gcttcaccctgaaggtatgatttacttttcacaacactttctac 73837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 89
Target Start/End: Complemental strand, 7969 - 7939
Alignment:
Q  59 tatgattcacttttcacaacactttctacac 89  Q
    |||||||||||||||||||||||||||||||    
T  7969 tatgattcacttttcacaacactttctacac 7939  T

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