View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4144_low_1 (Length: 316)
Name: NF4144_low_1
Description: NF4144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4144_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 300
Target Start/End: Complemental strand, 54457049 - 54456771
Alignment:
| Q |
22 |
gagaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgccactggtctgtggaaaatgtttgatttcaggtggttgtgaagcat |
121 |
Q |
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| T |
54457049 |
gagaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgtcactggtctgtggaaaatgtttgatttcaggtggttgtgaagcat |
54456950 |
T |
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| Q |
122 |
caacagcaacagggttcatcatcatcatcggtgtagaatttgaccacacagaattgagaggcttctgcatagttccaaacgccccctccattgcaagctc |
221 |
Q |
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| T |
54456949 |
caacagcaacagggttcatcatcatcatcggtgtagaatttgaccacacagaattgagaggcttctgcatagttccaaacgccccctccattgcaagctc |
54456850 |
T |
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| Q |
222 |
cctcctcacttcatcctccaactctatccgccgcaacatatcccgcctgatttgttccttctccatctctcgtcgtaat |
300 |
Q |
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| T |
54456849 |
cctcctcacttcatcctccaactctatccgccgcaacatatcccgccggatttgttccttctccatctctcgtcgtaat |
54456771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 54056601 - 54056450
Alignment:
| Q |
149 |
tcggtgtagaatttgaccacacagaattgagaggcttctgcatagttccaaacgccccctccattgcaagctccctcctcacttcatcctccaactctat |
248 |
Q |
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| T |
54056601 |
tcggtgtagaatttgaccatagagaattgagaggcctctgcatggttccaaacgccccctccattgcaagctccctcctcacttcctcctccaactccat |
54056502 |
T |
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| Q |
249 |
ccgccgcaacatatcccgcctgatttgttccttctccatctctcgtcgtaat |
300 |
Q |
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| T |
54056501 |
ccgcctcaacatatcccgccggatttgttccttctcgatctctcgtcgtaat |
54056450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 54056661 - 54056600
Alignment:
| Q |
23 |
agaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgccactggtc |
84 |
Q |
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|||| ||| ||||||| || | ||||||||||||||||||||||||||||||| ||| |||| |
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| T |
54056661 |
agaaaagagtagaaaacgtaatgaaactgaccaatagaataactttgtccttgtcacaggtc |
54056600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 15039895 - 15039967
Alignment:
| Q |
185 |
tctgcatagttccaaacgccccctccattgcaagctccctcctcacttcatcctccaactctatccgccgcaa |
257 |
Q |
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| T |
15039895 |
tctgcatggttccaaacgtcctctccattgcaagctccctccacacctcctcctccaattctttctgccgcaa |
15039967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15039756 - 15039809
Alignment:
| Q |
23 |
agaagagaatagaaaaagttacgaaac-tgaccaatagaataactttgtccttg |
75 |
Q |
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| T |
15039756 |
agaagagaatagaaaaagttatgaaactttaccaatagaataattttgtccttg |
15039809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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