View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4145_low_1 (Length: 463)
Name: NF4145_low_1
Description: NF4145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4145_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 41 - 325
Target Start/End: Original strand, 33787925 - 33788208
Alignment:
| Q |
41 |
caagtgattagcaaagagcacaaaaacatgtttcgtccgttttacaaggaaaatacatgtgtcggttaaatctcagatagagtgtggtctgcgtgacaca |
140 |
Q |
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| T |
33787925 |
caagtgattagcaaagagcacagaaacatgtttcgtccgttttacaaggaaaatacatgtgtcggttaaatctcaggtagagtgtggtctgcgtgacaca |
33788024 |
T |
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| Q |
141 |
tagcctaaaatatgtaacatctgaccacatgcaattaatgaaaaaaccaaagtccaattgcttatgcttcacttcctacgagtttatatgtttaaattta |
240 |
Q |
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| T |
33788025 |
tagcctaaaatatgtaacatttgaccacatgcaattaatgaaaa-accaaagtccaattgcttatgcttcacttcttacgagtttatatgtttaaattta |
33788123 |
T |
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| Q |
241 |
tgataatgatatagttactgaaaaattaccgactactatataattaaacatattctaaagatatagttttaaactccttttaact |
325 |
Q |
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| T |
33788124 |
tgataatgatatagttactgaaaaattaccgactactatataattaaacatattttaaagatatagttttaaactccttttaact |
33788208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 33788225 - 33788357
Alignment:
| Q |
311 |
aaactccttttaactgaaatatatggttacttccgagcc-gtataattgcgtacactaattcatttaaaccagaccacagcaacaattgtttaagtccct |
409 |
Q |
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||||||||||||||||||| || ||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||||| || | ||||||| ||||| |
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| T |
33788225 |
aaactccttttaactgaaacatgtggttactttcgagcctgtataattgcgtacattaattcatttgaaccagaccacagtaatatgtgtttaattccct |
33788324 |
T |
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| Q |
410 |
taaccatttgattaagaatttgatctttgattt |
442 |
Q |
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| T |
33788325 |
taaccatttgattaagaatttgatctttgattt |
33788357 |
T |
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