View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4145_low_2 (Length: 386)
Name: NF4145_low_2
Description: NF4145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4145_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 30782928 - 30782569
Alignment:
| Q |
12 |
atgaagactgaacacaaacaacacacacttagcaacattgatcctagattacactagactattgtcaataataaacatccttgagatttaaatttaaggg |
111 |
Q |
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| T |
30782928 |
atgaagactgaacacaaacaacacacacttagcaacattgatcctagattacactagactattgtcaataataaacatccttgagatttaaatttaaggg |
30782829 |
T |
|
| Q |
112 |
cacaaactgcacttataaaatgttttgaattgcagcccacaattgcagtaacatccgcaacatcaagatttttgaagtaagtgcaactgcatttgtaacc |
211 |
Q |
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| T |
30782828 |
cacaaactgcacttataaaatgttttgaattgcagcccacaattgcagtaacatccgcaacatcaagatttttgaagtaagtgcaactgcatttgtaacc |
30782729 |
T |
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| Q |
212 |
acataggccacaattttctacattatcaaagatggggacataacatcaaagccaactgttaggataccgggttgggcctaagcccaaccaatgcgttgaa |
311 |
Q |
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| T |
30782728 |
gcataggccacaattttctacattatcaaagatggggacataacatcaaagccaactgttaggataccgggttgggcctaagcccaaccaacgcgttgaa |
30782629 |
T |
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| Q |
312 |
taggaaagctggaagggaactgctgatgtagcaattagagggcatatgcaacataattat |
371 |
Q |
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| T |
30782628 |
taggaaagctggaagggaactgctgatgtagcaattagagggcatatgcaacataattat |
30782569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 39734160 - 39734106
Alignment:
| Q |
292 |
agcccaaccaatgcgttgaataggaaagctggaagggaactgctgatgtagcaat |
346 |
Q |
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| T |
39734160 |
agcccaacaaatgggttgaataggaaagctggaagggaattgctgatgtggcaat |
39734106 |
T |
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