View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4146_high_5 (Length: 301)

Name: NF4146_high_5
Description: NF4146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4146_high_5
NF4146_high_5
[»] chr5 (4 HSPs)
chr5 (1-191)||(38816749-38816932)
chr5 (136-190)||(22013364-22013418)
chr5 (227-274)||(7677765-7677812)
chr5 (136-191)||(19820448-19820503)
[»] chr1 (5 HSPs)
chr1 (168-291)||(35583265-35583388)
chr1 (136-190)||(39130822-39130876)
chr1 (227-275)||(1815306-1815354)
chr1 (227-274)||(43492457-43492504)
chr1 (136-190)||(5927395-5927449)
[»] chr7 (3 HSPs)
chr7 (136-194)||(27944991-27945049)
chr7 (227-260)||(7197274-7197307)
chr7 (230-274)||(8234198-8234242)
[»] chr6 (3 HSPs)
chr6 (227-274)||(16766757-16766804)
chr6 (136-190)||(8365574-8365628)
chr6 (151-191)||(9027143-9027183)
[»] chr3 (1 HSPs)
chr3 (227-274)||(40993298-40993345)
[»] chr2 (2 HSPs)
chr2 (227-274)||(2438682-2438729)
chr2 (136-191)||(33519736-33519791)
[»] chr8 (1 HSPs)
chr8 (136-190)||(25192402-25192456)
[»] scaffold0053 (1 HSPs)
scaffold0053 (227-275)||(8847-8895)
[»] chr4 (1 HSPs)
chr4 (227-275)||(34306766-34306814)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 38816932 - 38816749
Alignment:
Q  1 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  101 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgctgacacc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||| ||||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactcc-------gcacggatactgacacgccgacacc 38816749  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 22013364 - 22013418
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacac 190  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||| |||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacac 22013418  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 274  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 19820503 - 19820448
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacacc 191  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| | ||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacacc 19820448  T

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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 35583388 - 35583265
Alignment:
Q  168 cacggatactgacacgctgacaccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgtccgacaccgtgtcacg 267  Q
    |||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35583388 cacggagaccgacacggcgacaccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgcccgacactgtgtcacg 35583289  T
Q  268 cctaatctatagaatgtctctgct 291  Q
    ||||||||||||||||||| ||||    
T  35583288 cctaatctatagaatgtctgtgct 35583265  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 39130876 - 39130822
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacac 190  Q
    |||||||||||| |||||||| ||||||||| || ||||| ||||||||||||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacac 39130822  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 275  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 274  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 5927449 - 5927395
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacac 190  Q
    |||| ||||||| |||||||| ||||||||| |||||| ||||||||||| ||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacac 5927395  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 27944991 - 27945049
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacaccact 194  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||| |||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccact 27945049  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccg 260  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  230 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 274  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 16766757 - 16766804
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 274  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 8365628 - 8365574
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacac 190  Q
    |||||||||||| |||||||| || |||||| |||||| |||||||||| |||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacac 8365574  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 9027143 - 9027183
Alignment:
Q  151 acggactccggacacggcacggatactgacacgctgacacc 191  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacacc 9027183  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 274  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 274  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 33519736 - 33519791
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacacc 191  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| | ||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacacc 33519791  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 25192456 - 25192402
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacggatactgacacgctgacac 190  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||| |||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacac 25192402  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 275  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  227 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 275  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

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