View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_high_13 (Length: 355)
Name: NF4147_high_13
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 49206279 - 49206624
Alignment:
| Q |
10 |
gcagagatgatggttgagcagcggcacggcaatagcggtgagagggatgatgtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgta |
109 |
Q |
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| T |
49206279 |
gcagtgatgatggttgagcagcggcacggcaatagcggtgagagggatggtgtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgta |
49206378 |
T |
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| Q |
110 |
gtagaagcgaaaagcatgatttgatttcaatttattttgttgttggtggtggatgtgggttaggttagaactatcatgattttaacaagtgattggagct |
209 |
Q |
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| T |
49206379 |
gtagaagcgaaaagcatgatttgatttcaatttattttgttgttggtggtggatgtgggttaggttagaactatcatgattttaacaagtgattggagct |
49206478 |
T |
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| Q |
210 |
accaagctaccatataaccaaaattttgaggccctgtaaattggtaaagagctcgttatttcatgacttacgcataccgacaagaagaataaccacgatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
49206479 |
accaagctaccatataaccaaaattttgaggccctgtaaattggtaaagaactcgttatttcatgacttacgcataccgacaacaaaaataaccacgatg |
49206578 |
T |
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| Q |
310 |
tgatgattgtccttgtcagaagttttgttttaaacgccaaaattcc |
355 |
Q |
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| T |
49206579 |
tgatgattgtccctgtcagaagttttgttttaaacgccaaaattcc |
49206624 |
T |
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