View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_high_27 (Length: 236)
Name: NF4147_high_27
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34028799 - 34028594
Alignment:
| Q |
1 |
ttgtgattcaaaacagagaagtaacttggtttattgcagtcatttggtaaaagaaatgactctgcctctctagtatcaattttccaacaatcattgattt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34028799 |
ttgtgattcaaaacagacaagtaacttggtttattgcagtcatttggtaaaaaaaatgactctgcctctctagtatcaattttccaacaatcattgattt |
34028700 |
T |
|
| Q |
101 |
atgatcatttatgtaaaaatcatttatgtaaaaatcttaattcagcactatgaaatggctctgcaaagtcaatagtgaattttctaacaaacaaaaatga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34028699 |
atgatcatttatgtaaa---------------aatcttaattcagcactatgaaatggctctgcaaagtcaatagtgaattttctaacaaacaaaaatga |
34028615 |
T |
|
| Q |
201 |
atattctttaaaggaactaca |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
34028614 |
atattctttaaaggaactaca |
34028594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1059914 - 1060119
Alignment:
| Q |
1 |
ttgtgattcaaaacagagaagtaacttggtttattgcagtcatttggtaaaagaaatgactctgcctctctagtatcaattttccaacaatcattgattt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059914 |
ttgtgattcaaaacagacaagtaacttggtttattgcagtcatttggtaaaaaaaatgactctgcctctctagtatcaattttccaacaatcattgattt |
1060013 |
T |
|
| Q |
101 |
atgatcatttatgtaaaaatcatttatgtaaaaatcttaattcagcactatgaaatggctctgcaaagtcaatagtgaattttctaacaaacaaaaatga |
200 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1060014 |
atg---------------atcatttatgtaaaaatcttaattcagcactatgaaatggctctgcaaagtcaatagtgaattttctaacaaacaaaaatga |
1060098 |
T |
|
| Q |
201 |
atattctttaaaggaactaca |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
1060099 |
atattctttaaaggaactaca |
1060119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14937885 - 14937679
Alignment:
| Q |
1 |
ttgtgattcaaaacagagaagtaacttggtttattgcagtcatttggtaaaagaaa-tgactctgcctctctagtatcaattttccaacaatcattgatt |
99 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
14937885 |
ttgtcattcaaaacagagacgtaacttggtttattgcagtcatttggtaaaaaaaaatgactctgcctctttagtatcaattttccaacaatcattgatt |
14937786 |
T |
|
| Q |
100 |
tatgatcatttatgtaaaaatcatttatgtaaaaatcttaattcagcactatgaaatggctctgcaaagtcaatagtgaattttctaacaaacaaaaatg |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14937785 |
tatgatcatttatgtaaaaatc---------------ttaattcagcactatgaaatggctctgcaaattcaatagtgaattttctaacaaacaaaaatg |
14937701 |
T |
|
| Q |
200 |
aatattctttaaaggaactaca |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14937700 |
aatattctttaaaggaactaca |
14937679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34987108 - 34986902
Alignment:
| Q |
1 |
ttgtgattcaaaacagagaagtaacttggtttattgcagtcatttggtaaaagaaa-tgactctgcctctctagtatcaattttccaacaatcattgatt |
99 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34987108 |
ttgtcattcaaaacagagacgtaacttggtttattgcagtcatttggtaaaaaaaaatgactctgcctctttagtatcaattttccaacaatcattgatt |
34987009 |
T |
|
| Q |
100 |
tatgatcatttatgtaaaaatcatttatgtaaaaatcttaattcagcactatgaaatggctctgcaaagtcaatagtgaattttctaacaaacaaaaatg |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34987008 |
tatgatcatttatgtaaaaatc---------------ttaattcagcactatgaaatggctctgcaaattcaatagtgaattttctaacaaacaaaaatg |
34986924 |
T |
|
| Q |
200 |
aatattctttaaaggaactaca |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34986923 |
aatattctttaaaggaactaca |
34986902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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