View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_high_29 (Length: 233)
Name: NF4147_high_29
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 27442294 - 27442506
Alignment:
| Q |
14 |
cagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttcaaatgactgtttga |
113 |
Q |
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| T |
27442294 |
cagcagtgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttcaaatgactgtttga |
27442393 |
T |
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| Q |
114 |
tgaaccattcagcaaggttgatgacattgtcttgtcggctgtcgtcgagtgctctttttccagttatcatccccattagaatcacaccatagctgtatac |
213 |
Q |
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| T |
27442394 |
tgaaccattcagcaaggttgatgacattgtcttgttggctgtcgtcgagtgctctttttccagttatcatccccattagaatcacaccatagctgtatac |
27442493 |
T |
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| Q |
214 |
gtctacctctgtg |
226 |
Q |
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|||||||| |||| |
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| T |
27442494 |
gtctacctttgtg |
27442506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 11838143 - 11838064
Alignment:
| Q |
26 |
gccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttcaaatga |
105 |
Q |
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| T |
11838143 |
gccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaatgaccttttcaaatga |
11838064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 11850835 - 11850747
Alignment:
| Q |
17 |
cattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttcaaatga |
105 |
Q |
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| T |
11850835 |
cattggcttgccaatcctgccatagtcctgaaactctccaggccttcctcgtctatgtccattgctggatcaatgaccttttcgaatga |
11850747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 11855684 - 11855769
Alignment:
| Q |
14 |
cagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttc |
99 |
Q |
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||||| || ||||||||||||| ||| ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |
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| T |
11855684 |
cagcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgttgatgtccattgctggatcaatgaccttttc |
11855769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 11837984 - 11837928
Alignment:
| Q |
170 |
tttccagttatcatccccattagaatcacaccatagctgtatacgtctacctctgtg |
226 |
Q |
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| T |
11837984 |
tttccggttatcatctccataagaatcacaccatagctgtatacgtctacctttgtg |
11837928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 11850666 - 11850611
Alignment:
| Q |
171 |
ttccagttatcatccccattagaatcacaccatagctgtatacgtctacctctgtg |
226 |
Q |
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| T |
11850666 |
ttccggttatcatctccataagaatcacgccatagctgtatacgtctacctttgtg |
11850611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 11855850 - 11855903
Alignment:
| Q |
165 |
ctctttttccagttatcatccccattagaatcacaccatagctgtatacgtcta |
218 |
Q |
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| T |
11855850 |
ctctctttccggttatcatctccataagaatcacgccatagctgtacacgtcta |
11855903 |
T |
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