View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4147_high_4 (Length: 523)
Name: NF4147_high_4
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 22 - 506
Target Start/End: Original strand, 43742148 - 43742623
Alignment:
| Q |
22 |
tcttggttctaacttctaacattgtattgtgaggagtacttattaatttgtgtaatttgtggaattccctctcattaactggtttgaacaagcagtctct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43742148 |
tcttggttctaacttctaacattgtattgtgaggagtacttattaatttgtg---------gaattccctctcatttactggtttgaacaagcagtctct |
43742238 |
T |
|
| Q |
122 |
ttctcttcccttattttctaatcctttcccactaagtcattgtcttccgatcttaaacgccaattcctctacatcnnnnnnnatgtcatgaaaactggaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43742239 |
ttctcttcccttattttctaatcctttcccactaagtcattgtcttccgatcttaaacgccaattcctctacatcttttttcatgtcatgaaaactggaa |
43742338 |
T |
|
| Q |
222 |
atttagactaatttatggtcatattttgattttcctcattaattgcctaagattttctacatatgatttcaacccaacccaatttttcaattaagtcaat |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43742339 |
atttagactaatttatggtcatattttgattttcctcattaattgcctaagattttctacatatgatttcaacccaatccaatttttcaattaagtcaat |
43742438 |
T |
|
| Q |
322 |
taactcaatgttcattagtcgcagctgcagcatactccagcaccagagcttgagagtgaccacaccagggagcatagaactcaaccataaggaattggtt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43742439 |
taactcaatgttcattagtcgcagctgcagcatactccagcaccagagcttgagagtgaccacaccagggagcatagaactcaaccataaggaattggtt |
43742538 |
T |
|
| Q |
422 |
cttttcaattacactagtaaagttttgctccttcaaaacgacaacatctttttccttcatttcttgctacttgaactcgtcttct |
506 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43742539 |
cttttcaattacactggtaaagttttgctccttcaaaacgacaacgtctttttccttcatttcttgctacttgaactcgtcttct |
43742623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 21886197 - 21886064
Alignment:
| Q |
339 |
gtcgcagctgcagcatactccagcaccagagcttgagagtgaccacaccagggagcatagaactcaaccataaggaattggttcttttcaattacactag |
438 |
Q |
| |
|
||||| || ||||||||||| || ||| ||||||| | || |||||||| |||||||| || |||||||| | ||||||||| ||||||||||| ||| |
|
|
| T |
21886197 |
gtcgccgccgcagcatactctggcgccaaagcttgacaatgtccacaccacggagcataaaattcaaccatcacgaattggttgttttcaattacggtag |
21886098 |
T |
|
| Q |
439 |
taaagttttgctccttcaaaacgacaacatcttt |
472 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||| |
|
|
| T |
21886097 |
tgaagtttcgctcaatcaaaacgacaacatcttt |
21886064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University