View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_1 (Length: 749)
Name: NF4147_low_1
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 235 - 732
Target Start/End: Complemental strand, 50391570 - 50391073
Alignment:
| Q |
235 |
cgtgtcttccctttttagatagatatagaaaatatgcatgacaacatattaaatttcatatttacacttttttaagggaaaatttaatatttacacttaa |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50391570 |
cgtgtcttccctttttagatagatatagaaaatatgcatgacaacatattaaatttcatatttacacttttttaagggaaaatttaatatttacacttaa |
50391471 |
T |
|
| Q |
335 |
ttgtggatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctgccaactttgtcaccttcttctg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50391470 |
ttgtggatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctgccaactttgtcaccttcttctg |
50391371 |
T |
|
| Q |
435 |
tctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataag |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50391370 |
tctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataag |
50391271 |
T |
|
| Q |
535 |
gttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctt |
634 |
Q |
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| T |
50391270 |
gttaacaacagcaccaaagaaagttgcagctgcaataataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctt |
50391171 |
T |
|
| Q |
635 |
tgctttccaagtgcttccaattgtttcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttat |
732 |
Q |
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| T |
50391170 |
tgctttccaagtgcttccaattgtttctcagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttat |
50391073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 413 - 728
Target Start/End: Complemental strand, 50394666 - 50394351
Alignment:
| Q |
413 |
ccaactttgtcaccttcttctgtctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
512 |
Q |
| |
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|||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394666 |
ccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
50394567 |
T |
|
| Q |
513 |
ttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaagataacttgaaacaatcaacgccaacacaatt |
612 |
Q |
| |
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| ||||||| ||||||||||| ||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50394566 |
tagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaatt |
50394467 |
T |
|
| Q |
613 |
caattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatat |
712 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50394466 |
caattcatgcccttctattctatgctttccaagtgcttccaattgtttcttagcctctttgtcatacaaatgaccagtgatcttcacattaagcacatat |
50394367 |
T |
|
| Q |
713 |
aagccaattggacttg |
728 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
50394366 |
aatccaagtggacttg |
50394351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 340 - 728
Target Start/End: Complemental strand, 50386318 - 50385932
Alignment:
| Q |
340 |
gatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctg-ccaactttgtcaccttcttctgtctt |
438 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||| ||| |||||||| | ||||| ||||| || |||||||||||| |||| |||||||| |
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| T |
50386318 |
gatctatgatctataatatcgtccttaaccatttgtcctaattccaagttgtcgcaacatgc---tgctgttgaccaactttgtcatcttcctctgtctt |
50386222 |
T |
|
| Q |
439 |
tcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggtta |
538 |
Q |
| |
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| | |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
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|
| T |
50386221 |
ttctacgttctttacctccaccatttcagcttcttccctatatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaa |
50386122 |
T |
|
| Q |
539 |
acaacagcaccaaagaaagttgcagctgcaatgataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgct |
638 |
Q |
| |
|
|||||||||||||| || |||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
50386121 |
acaacagcaccaaaaaatgttgcagctgtgataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgct |
50386022 |
T |
|
| Q |
639 |
ttccaagtgcttccaattgtttcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttg |
728 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||| |
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|
| T |
50386021 |
ttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaaggggacttg |
50385932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 50391781 - 50391627
Alignment:
| Q |
24 |
ttgaggggaagattattggttttcaagtgtgagtggttagtcattcataagttcataactaagtttttaagtaatgatttaaatttctattgtactggtg |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50391781 |
ttgaggggaatattattggttttcaagtgtgagtggttagtcattcataagttcataactaagtttttaagtaatgatttaaatttctattgtagtggtg |
50391682 |
T |
|
| Q |
124 |
ttgttcctattttaatgagatttcatagtttttaattattaatttatacaattgt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50391681 |
ctgttcctattttaatgagatttcatagtttttaattattaatttatacaattgt |
50391627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 20755024 - 20755082
Alignment:
| Q |
87 |
tttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagatt |
145 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||| ||||||| ||||||||||||||||||| |
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|
| T |
20755024 |
tttttaattaataatttaaattcctaccgtagtggtgttcttcctattttaatgagatt |
20755082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 726
Target Start/End: Complemental strand, 50408029 - 50407963
Alignment:
| Q |
660 |
tcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggact |
726 |
Q |
| |
|
||||||||||||||||||| |||||||||| || | |||||||| | |||||| ||||||||||| |
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|
| T |
50408029 |
tcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggact |
50407963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 519
Target Start/End: Original strand, 19712372 - 19712425
Alignment:
| Q |
466 |
agcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcct |
519 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
19712372 |
agcttcctctctgaacttcttgtatatgtcacctttataaaactctctagtcct |
19712425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 574 - 714
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
574 |
aatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgtttcttagcttcttt |
672 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || |||||||| || |
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|
| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
673 |
gtcatacaaatgaccagtgatcgccacattaagcacatataa |
714 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 18721284 - 18721220
Alignment:
| Q |
106 |
atttctattgtactggtgttgttcctattttaatgagatttca-tagtttttaattattaattta |
169 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| | || |||||||||| ||||||| |
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|
| T |
18721284 |
atttctattgtagtgaggttgttcctattttaatgagatttaactattttttaattaataattta |
18721220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 28013490 - 28013557
Alignment:
| Q |
79 |
taactaagtttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagattt |
146 |
Q |
| |
|
||||||| ||||||| |||| | ||||||| |||||||| || ||||||| | ||||||||||||||| |
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|
| T |
28013490 |
taactaattttttaattaataaattaaattcctattgtaatgatgttgtttcaattttaatgagattt |
28013557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 26054769 - 26054827
Alignment:
| Q |
80 |
aactaagtttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaa |
138 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
26054769 |
aactaaatttttaattaataatttaaatttccattatagcggtgttgttcctattttaa |
26054827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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