View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_10 (Length: 432)
Name: NF4147_low_10
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 5 - 417
Target Start/End: Original strand, 950401 - 950812
Alignment:
| Q |
5 |
aagaagcataggcaagtccatttctatgacaaatatctgcatctccaaaagggttgcctgtttgtttacatacagctgggacaataatcaagggcaaatt |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
950401 |
aagaagcataagcaagtccatttctatgacaaatatctgcatctccaaaagggttgcctgtttgtttacatacagctgggacaataatcaagggcaaatt |
950500 |
T |
|
| Q |
105 |
tcctagatttcctgtagacatcaaatcaaattcatctttaacgttaacttttttattaaaatatgtgataattagatgcgtaaggagatnnnnnnnntgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
950501 |
tcctagatttcctgtagacatcaaatcaaattcatctttaacattaactttttttttaaaatatgtgataattagatgtgtaaggagataaaaaaa-tgg |
950599 |
T |
|
| Q |
205 |
acaatctggtacactaaagctcccgcatatgcagaatagggaagaaaataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaaca |
304 |
Q |
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| T |
950600 |
acaacccggtgcactaaagctcctgcatatgcagagtcgggaagaagataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaaca |
950699 |
T |
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| Q |
305 |
caaggccttgaagatgatgaggaactctcatcaatttaactaccaaccatccaagagctgctccaattataaatgtgagaaggacattcaatggcataaa |
404 |
Q |
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| T |
950700 |
caaggccttgaagatgatgaggaactctcatcaatttaactaccaaccatccaagagctgctccaattataaatgtgagaaggacattcaatggcataaa |
950799 |
T |
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| Q |
405 |
ccacctacataat |
417 |
Q |
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| T |
950800 |
ccacctacataat |
950812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 252 - 417
Target Start/End: Complemental strand, 1101183 - 1101018
Alignment:
| Q |
252 |
ataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaacacaaggccttgaagatgatgaggaactctcatcaatttaactaccaac |
351 |
Q |
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| T |
1101183 |
ataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaacacaaggccttgaagatgatgaggaactctcatcaatttaactaccaac |
1101084 |
T |
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| Q |
352 |
catccaagagctgctccaattataaatgtgagaaggacattcaatggcataaaccacctacataat |
417 |
Q |
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| T |
1101083 |
catccaagagctgctccaattataaatgtgagaaggacattcaatggcataaaccaccttcataat |
1101018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 1101365 - 1101249
Alignment:
| Q |
6 |
agaagcataggcaagtccatttctatgacaaatatctgcatctccaaaagggttgcctgtttgtttacatacagctgggacaataatcaagggcaaattt |
105 |
Q |
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| T |
1101365 |
agaagcataagcaagtctatttctacgacaaatatccgcatctccaaaagggttgcctctttatttacaaacagctggggcaataatcaagggcaaattt |
1101266 |
T |
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| Q |
106 |
cctagatttcctgtaga |
122 |
Q |
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|||| ||||| |||||| |
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| T |
1101265 |
cctaaatttcgtgtaga |
1101249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 942596 - 942550
Alignment:
| Q |
283 |
cctgcagcacaacaccccaacacaaggccttgaagatgatgaggaac |
329 |
Q |
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| T |
942596 |
cctgcagcacaacaccccatcacaaggccatgaagatgacgaggaac |
942550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 30826167 - 30826135
Alignment:
| Q |
203 |
ggacaatctggtacactaaagctcccgcatatg |
235 |
Q |
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| T |
30826167 |
ggacaatctggtgcactaaagctcccgcatatg |
30826135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 31525835 - 31525803
Alignment:
| Q |
206 |
caatctggtacactaaagctcccgcatatgcag |
238 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
31525835 |
caatccggtacactaaagctcccgcatatgcag |
31525803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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