View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4147_low_11 (Length: 416)
Name: NF4147_low_11
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Complemental strand, 5160497 - 5160111
Alignment:
| Q |
13 |
cagaacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5160497 |
cagaatctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagtttttttatcttaccaattgatgaaggtat |
5160398 |
T |
|
| Q |
113 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160397 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgat |
5160298 |
T |
|
| Q |
213 |
atatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgat |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160297 |
atatccaaataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgat |
5160198 |
T |
|
| Q |
313 |
aagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160197 |
aagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
5160111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 5182739 - 5182356
Alignment:
| Q |
16 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
5182739 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtactcaagttgtttcatcttaccaattgatgaaggtatatt |
5182640 |
T |
|
| Q |
116 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
5182639 |
tccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgtttgatata |
5182540 |
T |
|
| Q |
216 |
tccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataag |
315 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||| |||| ||||||| ||||||| ||| ||||||| || |||||||| |||||||| | |
|
|
| T |
5182539 |
tccaaataattcatgttatgattatctatcaaccaacttgggaatgaaccaactaaattgtttctggagaggtccaagaatatcaaattatattgatatg |
5182440 |
T |
|
| Q |
316 |
aaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
399 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5182439 |
aaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaa |
5182356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 5173400 - 5173027
Alignment:
| Q |
20 |
tgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttcct |
119 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
5173400 |
tgtggccagttgtttaggtaactcacctgagaaattattatgagagaggtcaaagtactcaagatttttcatcttaccaattgatgaaggtatatttcct |
5173301 |
T |
|
| Q |
120 |
tcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatatatcca |
219 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||||||||| ||| || || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
5173300 |
tcaaagctattccatgaaaagttcaaataggtaatacttggaaggaatatatc------ttctggaagcaaaccactaaaattgttgtttgatagatcca |
5173207 |
T |
|
| Q |
220 |
tataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataagaaag |
319 |
Q |
| |
|
||| | ||| || ||||| |||||||||||||||| ||||||||| || ||||| | || ||||||| || |||||||| |||||||||||||| |
|
|
| T |
5173206 |
aatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaatattgttgctagagaggtccatcagtatcaaattatattgataagaaag |
5173107 |
T |
|
| Q |
320 |
aaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5173106 |
aaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaa |
5173027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 5196139 - 5195753
Alignment:
| Q |
16 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5196139 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattttgagagaagtccaagagttgaagttgtttcatcttaccaattgatgaaggtatatt |
5196040 |
T |
|
| Q |
116 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| || | |||||||||| | | | |||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
5196039 |
tccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagcaaaccactcaaattgttgtttgatata |
5195940 |
T |
|
| Q |
216 |
tccatataattaatgttatgattatgtatcaacca---acttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgat |
312 |
Q |
| |
|
|||| ||| | |||| || ||||||||||||||| ||||||| ||||||| ||| ||||| | ||| ||| ||| | | |||||| ||||||| |
|
|
| T |
5195939 |
tccaaatatatcatgtcatcattatgtatcaaccaattacttgggagtgagccatttatattgttgctggagaggaccaagtataccaaattatattgat |
5195840 |
T |
|
| Q |
313 |
aagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
399 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
5195839 |
atgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttaggaa |
5195753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 110 - 399
Target Start/End: Original strand, 4856686 - 4856975
Alignment:
| Q |
110 |
tatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgttt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||| |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
|
| Q |
210 |
gatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtatt |
309 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||||| |||||||| |||| ||||||| ||||||| ||| ||||||| || | |||||| |||| |
|
|
| T |
4856786 |
gatatatccaaataattcatgttatgattatctatcaacgaacttgggaatgaaccaactaaattgtttctggagaggtccaagaataccaaattatatt |
4856885 |
T |
|
| Q |
310 |
gataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
399 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
4856886 |
gatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaa |
4856975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 5214296 - 5213921
Alignment:
| Q |
16 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
5214296 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattatgagagaggtccaaggactcaagttttttcatcttaccaattgatgaaggtatatt |
5214197 |
T |
|
| Q |
116 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
215 |
Q |
| |
|
|||||||||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| |||||||| || || ||||||||| ||||| |||||||| |
|
|
| T |
5214196 |
tccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttggaagaaaaccacttaaactgttgattgatata |
5214097 |
T |
|
| Q |
216 |
tccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataag |
315 |
Q |
| |
|
|||| ||| || || | | |||||| ||||| |||||| || | ||||| | |||||| | ||| ||||||| ||| |||||| | |||||||| | |
|
|
| T |
5214096 |
tccaaatatttcat---agaagaatgtatgaaccatcttgggaataaaccaaccaatttgttgctggataggtccatcaatatcaaactatattgatatg |
5214000 |
T |
|
| Q |
316 |
aaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5213999 |
aaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaattt |
5213921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 23 - 399
Target Start/End: Original strand, 4842125 - 4842498
Alignment:
| Q |
23 |
ggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttccttca |
122 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4842125 |
ggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtacttaagttttttcatcttacaaattgatgaaggtatatttccttca |
4842224 |
T |
|
| Q |
123 |
aagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatatatccatat |
222 |
Q |
| |
|
||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| ||||| || ||||| ||||| |||||||||||||||| ||||| || |
|
|
| T |
4842225 |
aagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctggaagcaaaccactaaaattgttgtttgatagatccaaat |
4842324 |
T |
|
| Q |
223 |
aattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataagaaagaaa |
322 |
Q |
| |
|
| | ||| | ||||| |||||||||||||||| |||||||| | ||||| | || ||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
4842325 |
attgtatgccaacattatttatcaaccaacttgggagtgagccaa---tattgttgctagagaggtccatcactatcaaattatattgataagaaagaaa |
4842421 |
T |
|
| Q |
323 |
agtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaa |
399 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4842422 |
agtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaa |
4842498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 94 - 365
Target Start/End: Complemental strand, 7142598 - 7142324
Alignment:
| Q |
94 |
taccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaaccc |
193 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |||||||||||| | | |||| |||||||||| | ||| ||||| || ||||| || |
|
|
| T |
7142598 |
taccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctggaagcaaacc |
7142499 |
T |
|
| Q |
194 |
acttaaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaa---cttggggatgagccaactattttgtttccggaaaggtcc |
290 |
Q |
| |
|
|||||||||||||||||||||||||| || | || || |||||||||||||||| |||||| |||||||||||| ||||||| ||| |||||| |
|
|
| T |
7142498 |
acttaaattgttgtttgatatatccaaatgttgtatcccatcattatgtatcaaccaatttcttgggagtgagccaactatattgtttctggagaggtcc |
7142399 |
T |
|
| Q |
291 |
accaacatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaattt |
365 |
Q |
| |
|
| || |||||| | |||||| |||| |||| ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
7142398 |
aagaatgccaaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaattt |
7142324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 5203324 - 5203271
Alignment:
| Q |
236 |
attatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtc |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
5203324 |
attatgtatcaaccaacttgggaatgagccaactattttgtttctggtaaggtc |
5203271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 4856621 - 4856676
Alignment:
| Q |
19 |
ctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaag |
74 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4856621 |
ctgtggccaattgttcaggtaactcacctgagaaatgattctgagagaggtccaag |
4856676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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