View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4147_low_12 (Length: 410)

Name: NF4147_low_12
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4147_low_12
NF4147_low_12
[»] chr7 (2 HSPs)
chr7 (8-392)||(43016195-43016580)
chr7 (30-157)||(12489526-12489652)
[»] chr3 (3 HSPs)
chr3 (28-156)||(33890447-33890571)
chr3 (36-121)||(35495337-35495422)
chr3 (92-129)||(35596328-35596365)
[»] chr1 (3 HSPs)
chr1 (11-158)||(31123245-31123390)
chr1 (52-104)||(29500361-29500413)
chr1 (95-127)||(10147608-10147640)
[»] chr2 (4 HSPs)
chr2 (19-159)||(11361737-11361878)
chr2 (92-129)||(23899196-23899233)
chr2 (92-129)||(23889595-23889632)
chr2 (92-129)||(23893671-23893708)
[»] chr8 (1 HSPs)
chr8 (52-158)||(40499432-40499540)
[»] chr4 (3 HSPs)
chr4 (36-158)||(23112121-23112241)
chr4 (92-129)||(37877973-37878010)
chr4 (98-157)||(12105400-12105460)
[»] chr6 (1 HSPs)
chr6 (52-166)||(14526827-14526943)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 43016580 - 43016195
Alignment:
Q  8 gagcacagaggagaggaagagaagaaaattgtgtggttgtgagtaaaa-ctaccaaactacccctagcatatgaaattaccaatctacccctgccacaac 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  43016580 gagcacagaggagaggaagagaaaaaaattgtgtggttgtgagtaaaaactaccaaactacccctagcatatgaaattagcaatctacccctgccacatc 43016481  T
Q  107 agcagtggtacaaagtgtgtacacaaatggtggtctatgtatctttttcctaataataacagtcagatatgcatgtagcgaataattccgcccgtacata 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  43016480 agcagtggtacaaagtgggtacacaaatggtggtctatgtatctttttcctaataataacagtcagatatgcatgcagcgaataattccgtccgtacata 43016381  T
Q  207 atactaacaaattccgatcgctttcggtcaacaaaaaacgaataaatttggttattttggtcaagttttcgtcttccactaatatttattcacttgatct 306  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016380 atactaacaaattccggtcgctttcggtcaacaaaaaatgaataaatttggttattttggtcaagttttcgtcttccactaatatttattcacttgatct 43016281  T
Q  307 tttttatcaaacacacacaacaaaattctctctnnnnnnnncaacattctcaactatttattctttcaacttttatccatcttcat 392  Q
    |||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  43016280 tttttatcaaacacgcacaacaaaattctctctaaaaaaaacaacattctcaactatttattctttcaacttttatccatcttcat 43016195  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 12489652 - 12489526
Alignment:
Q  30 agaaaattgtgtggttgtgagtaaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagcagtggtacaaa-gtgtgtac 128  Q
    |||| ||||||||||||||||| ||| ||||||||||||  | ||||  ||||||||||| |||||||||||||| ||||||||||||||| | |||||     
T  12489652 agaagattgtgtggttgtgagtgaaattaccaaactacctattgcat--gaaattaccaaactacccctgccacatcagcagtggtacaaaggggtgtat 12489555  T
Q  129 acaaatggtggtctatgtatctttttcct 157  Q
    |  ||  ||||||||||||||||||||||    
T  12489554 attaaaagtggtctatgtatctttttcct 12489526  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 33890447 - 33890571
Alignment:
Q  28 gaagaaaattgtgtggttgtgagtaaaactaccaaactacccctagcatatgaaattac--caatctacccctgccacaacagcagtggtacaaagtgtg 125  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| |      |||||||||||||    
T  33890447 gaagagaattgtgtggttgtgagtaaaactaccaaactacccctagcatataaaattaccacaatctacccctgccacatc------ggtacaaagtgtg 33890540  T
Q  126 tacacaaatggtggtctatgtatctttttcc 156  Q
    |||||||||||||||||||||||||||||||    
T  33890541 tacacaaatggtggtctatgtatctttttcc 33890571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 35495422 - 35495337
Alignment:
Q  36 ttgtgtggttgtgagtaaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagcagtggtacaaag 121  Q
    |||||||||||| ||| |||||||||||||||| |||    ||||||||||||| |||||||| ||||| |||||||||| |||||    
T  35495422 ttgtgtggttgtaagtgaaactaccaaactacctctattgcatgaaattaccaaactacccctaccacatcagcagtggtgcaaag 35495337  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 35596328 - 35596365
Alignment:
Q  92 tacccctgccacaacagcagtggtacaaagtgtgtaca 129  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  35596328 tacccctgccacatcagcagtggtacaaagagtgtaca 35596365  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 31123390 - 31123245
Alignment:
Q  11 cacagaggagaggaagagaagaaaattgtgtggttgtgagtaaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagca 110  Q
    ||||||| | ||||||||||||   |||||||||||||| | ||||||||||||||||||||   | |||||||||||| ||||| |||||||| |||||    
T  31123390 cacagagaataggaagagaaga---ttgtgtggttgtgaatgaaactaccaaactacccctattgtgtgaaattaccaaactacctctgccacatcagca 31123294  T
Q  111 gtggtacaaa-gtgtgtacacaaatggtggtctatgtatctttttccta 158  Q
    ||| |||||| | ||||| ||| |  ||||||||  |||||||||||||    
T  31123293 gtgatacaaaggagtgtaaacatagagtggtctacctatctttttccta 31123245  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 29500361 - 29500413
Alignment:
Q  52 aaaactaccaaactacccctagcatatgaaattaccaatctacccctgccaca 104  Q
    ||||||||||||||| ||||| ||  |||||||||||| ||||||||||||||    
T  29500361 aaaactaccaaactatccctaacacgtgaaattaccaaactacccctgccaca 29500413  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 10147608 - 10147640
Alignment:
Q  95 ccctgccacaacagcagtggtacaaagtgtgta 127  Q
    |||||||||| ||||||||||||||||||||||    
T  10147608 ccctgccacatcagcagtggtacaaagtgtgta 10147640  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 11361737 - 11361878
Alignment:
Q  19 agaggaagagaagaaaattgtgtggttgtgagtaaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagcagtggtaca 118  Q
    |||||||| | ||||| |||||||||||||||| |||||| |||||||||| ||     ||||| |||||| ||  |||||||||| ||||||||||| |    
T  11361737 agaggaaggggagaaagttgtgtggttgtgagtgaaactatcaaactacccatattgcgtgaaactaccaaactgtccctgccacatcagcagtggtata 11361836  T
Q  119 aa-gtgtgtacacaaatggtggtctatgtatctttttcctaa 159  Q
    || | ||| | |  ||  ||||||||||||||||||||||||    
T  11361837 aaggggtggatattaaaagtggtctatgtatctttttcctaa 11361878  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 23899196 - 23899233
Alignment:
Q  92 tacccctgccacaacagcagtggtacaaagtgtgtaca 129  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  23899196 tacccctgccacatcagcagtggtacaaagtgtgtaca 23899233  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 23889595 - 23889632
Alignment:
Q  92 tacccctgccacaacagcagtggtacaaagtgtgtaca 129  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  23889595 tacccctgccacatcagcagtggtacaaagagtgtaca 23889632  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 23893671 - 23893708
Alignment:
Q  92 tacccctgccacaacagcagtggtacaaagtgtgtaca 129  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  23893671 tacccctgccacatcagcagtggtacaaagagtgtaca 23893708  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 40499540 - 40499432
Alignment:
Q  52 aaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagcagtggtacaaa-gtgtgtacacaaatg-gtggtctatgtatc 149  Q
    ||||||||||||||| ||||| |   |||||||| ||| |||||||||||||| |||||||||| |||| | | ||| | ||| | ||||||||||||||    
T  40499540 aaaactaccaaactatccctatcgcgtgaaattatcaaactacccctgccacatcagcagtggtgcaaaggggcgtatagaaaagagtggtctatgtatc 40499441  T
Q  150 tttttccta 158  Q
    |||||||||    
T  40499440 tttttccta 40499432  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 23112241 - 23112121
Alignment:
Q  36 ttgtgtggttgtgagtaaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagcagtggtacaaagtgtgtacacaaatg 135  Q
    |||||||||||| ||| |||||||||||||||| |||     |||||||| ||| | |||||| ||||| |||||||||||||||| || ||   | |      
T  23112241 ttgtgtggttgtaagtgaaactaccaaactacctctattgcgtgaaattatcaaaccacccctaccacatcagcagtggtacaaagggtatattgaga-- 23112144  T
Q  136 gtggtctatgtatctttttccta 158  Q
    |||||||||||||||||||||||    
T  23112143 gtggtctatgtatctttttccta 23112121  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 37878010 - 37877973
Alignment:
Q  92 tacccctgccacaacagcagtggtacaaagtgtgtaca 129  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  37878010 tacccctgccacatcagcagtggtacaaagagtgtaca 37877973  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 12105400 - 12105460
Alignment:
Q  98 tgccacaacagcagtggtacaaa-gtgtgtacacaaatggtggtctatgtatctttttcct 157  Q
    ||||||| ||||||||||| ||| | ||||||  ||| |||||||||||||||||||||||    
T  12105400 tgccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcct 12105460  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 14526827 - 14526943
Alignment:
Q  52 aaaactaccaaactacccctagcatatgaaattaccaatctacccctgccacaacagcagtggtacaaagtg-tgtacacaaatg-gtggtctatgtatc 149  Q
    ||||||| ||||||| | |||||   |||||||||||| |||||||||  ||| || || |||||||||| | |||| | ||| | ||||||||||||||    
T  14526827 aaaactatcaaactatcactagcgcgtgaaattaccaaactacccctgtaacatcaacactggtacaaaggggtgtatagaaaagagtggtctatgtatc 14526926  T
Q  150 tttttcctaataataac 166  Q
    ||||||| | |||||||    
T  14526927 tttttccaattaataac 14526943  T

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