View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_13 (Length: 409)
Name: NF4147_low_13
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_13 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 43 - 409
Target Start/End: Complemental strand, 1739625 - 1739259
Alignment:
| Q |
43 |
aaacttggtatctgattcaagaatcgactactaatcaagtatatctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattg |
142 |
Q |
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| T |
1739625 |
aaacttggtatctgattcaagaatcaactactaatcaagtatatctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattg |
1739526 |
T |
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| Q |
143 |
aaggttctcaaaatggttttgagcatagtgggacaagagatggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttctt |
242 |
Q |
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| T |
1739525 |
aaggttctcaaaatggttttgagcatagtgggacaagagatggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttctt |
1739426 |
T |
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| Q |
243 |
agcaaaaaggttatgtatctatatatctaaacatattctgaaaaatacaaataactccataaagagtnnnnnnntattggttttcttgatttctcagttc |
342 |
Q |
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| T |
1739425 |
agcaaaaaggttatgtatctatatatctaaacatattctaaaaaatacaaataactccataaagagtaaaaaaatattggttttcttgatttctcagttc |
1739326 |
T |
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| Q |
343 |
ttttatgacacatgtaattgatttgtcaattcnnnnnnnatattgatttctcaagaaaataaaaaca |
409 |
Q |
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| T |
1739325 |
ttttatgacacatgtaattgatttgtcaattctttttttatattgatttctcaagaaaataaaaaca |
1739259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 1718106 - 1717925
Alignment:
| Q |
92 |
taacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagagatggatatac |
191 |
Q |
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| T |
1718106 |
taacttgcagtaagcatgggatgaaagtgattgtggatttgcatgcagttgaaggttctcaaaatggttttgagcatagtgggacaagagatggatatac |
1718007 |
T |
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| Q |
192 |
agaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaaa |
273 |
Q |
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| T |
1718006 |
agaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaa |
1717925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 1755050 - 1754878
Alignment:
| Q |
82 |
tatatctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagag |
181 |
Q |
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| T |
1755050 |
tatatctttgtaatttacagaatccatgggatgaaagtgattgtggacttgcatgcagttgaaggttctcaaaatggtaatgatcacagtggaacaagag |
1754951 |
T |
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| Q |
182 |
atggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggtt |
254 |
Q |
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| T |
1754950 |
atggatttatagaatggggtgaatcatacatacctcagacagtctctgtcatagatttcctagcaaaaaggtt |
1754878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 263
Target Start/End: Complemental strand, 1749435 - 1749254
Alignment:
| Q |
82 |
tatatctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagag |
181 |
Q |
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| T |
1749435 |
tatatctttctaaattgcagaaatcatgagatgaaagtgattgtagatttgcatgctgttgaaggttctcaaaatggcaatgaacatagtggaacaagag |
1749336 |
T |
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| Q |
182 |
atggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatcta |
263 |
Q |
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| T |
1749335 |
atggatatacagaatggggtgattcttacatacctcagacagtagctgtgattgatttcttagcacaaaggttttgtatcta |
1749254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 38733148 - 38733119
Alignment:
| Q |
43 |
aaacttggtatctgattcaagaatcgacta |
72 |
Q |
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| T |
38733148 |
aaacttggtatctgattcaagaatcgacta |
38733119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 39145652 - 39145682
Alignment:
| Q |
42 |
aaaacttggtatctgattcaagaatcgacta |
72 |
Q |
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| T |
39145652 |
aaaacttggtatctgattcaagaatcgacta |
39145682 |
T |
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