View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4147_low_14 (Length: 371)
Name: NF4147_low_14
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 51113012 - 51112650
Alignment:
| Q |
1 |
caaacaaagcatcagaaacaggaaaagaagggaaagaagccgcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51113012 |
caaacaaagcatcagaaacaggaaaagaagggaaagaagccgcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaaga |
51112913 |
T |
|
| Q |
101 |
caaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112912 |
caaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtcc |
51112813 |
T |
|
| Q |
201 |
aaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112812 |
aaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgcca |
51112713 |
T |
|
| Q |
301 |
ctgatgcttctgaaaagaccaaacattatgctgctgacgaaagctatgcagatgatgatgatg |
363 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112712 |
ctgatgcttctgagaagaccaaacattatgctgctgacgaaagctatgcagatgatgatgatg |
51112650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University