View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_2 (Length: 587)
Name: NF4147_low_2
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_2 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 33721015 - 33721326
Alignment:
| Q |
18 |
taatgttgtctctcaactctagtttctcagctaaccagctttcttcctctaattagtgctatagattagcatagaaatgaaagtatatggagtagcaatc |
117 |
Q |
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| T |
33721015 |
taatgttgtctctcaactctagtttctcagctaaccagctttcttcctctaattagtgctatagattagcatagaaatgaaagtatatggagtagcaatc |
33721114 |
T |
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| Q |
118 |
tttgataaattaatagaattatgataggaatcattgttttgggagtttttatacgacaaaaatcggagcatgaatgtataaaatcggagcacaattttgt |
217 |
Q |
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| T |
33721115 |
tttgataaattaatagaattatgataggaatcattgctgtgggagtttttataagacaaaaatcggggcatgaatgtataaaatcggagcacaatcttgt |
33721214 |
T |
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| Q |
218 |
ggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggcttcgttcttcatgttttgagg |
317 |
Q |
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| T |
33721215 |
ggataacggtcaattcctactgtgtacgaactgcaaatcggggcacgaaatttctcaggacatgaccactattcaaggcttcgttcttcatgttttgagg |
33721314 |
T |
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| Q |
318 |
tgactaccattc |
329 |
Q |
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| T |
33721315 |
tgacttccattc |
33721326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 21219536 - 21219634
Alignment:
| Q |
62 |
tcctctaattagtgctatagattagcatagaaatgaaagtatatgga--gtagcaatctttgataaattaatagaattatgataggaatcattgttttg |
158 |
Q |
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| T |
21219536 |
tcctctaattattgctatagattagcctagaaatgaaaatgtatgctttgtagcaatctttgataaagtaatagaattatgataggaattattgttttg |
21219634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 338 - 534
Target Start/End: Complemental strand, 7462 - 7263
Alignment:
| Q |
338 |
tggcattggattcacttatgtctttgatcttt--ctttctttcaaatatgttgtttatctctttctttttccaaagcaccaggaccttacagtccaattt |
435 |
Q |
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| T |
7462 |
tggcattggattcacttgtgtctttgatatttttctttcttttaaatcttttgtttatctctttctttttccaaagcaccagaacctaacagtccaattt |
7363 |
T |
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| Q |
436 |
tgagaccaactcctattagtg-cagttcactagtaacaattacataagaacactcaataaatgtcctcaaaccgatgggcaaagtgaggtcctcaataaa |
534 |
Q |
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| T |
7362 |
ttagaccaattcctattagtgtcagttcactagtaacaattgcataagaacactcaataaatgtcctcaaacctatgggaaaagtgaggtcctcaataaa |
7263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 24944790 - 24944913
Alignment:
| Q |
199 |
aatcggagcacaattttgtggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggctt |
298 |
Q |
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||||||||||| ||||||||||||| ||||||||| | |||||||| ||| || | ||||||| |||||| || ||| || | || |||||||||||| |
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| T |
24944790 |
aatcggagcacgattttgtggataaaggtcaattcgtactgtgtacaaacaacagttcggggcacaaaatttttcgggatataagcattattcaaggctt |
24944889 |
T |
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| Q |
299 |
cgttcttcatgttttgaggtgact |
322 |
Q |
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| T |
24944890 |
cgctcttcatgttgtgaggtgact |
24944913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 21657533 - 21657497
Alignment:
| Q |
113 |
caatctttgataaattaatagaattatgataggaatc |
149 |
Q |
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| T |
21657533 |
caatctttgataaaataatagaattgtgataggaatc |
21657497 |
T |
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