View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4147_low_21 (Length: 290)

Name: NF4147_low_21
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4147_low_21
NF4147_low_21
[»] chr3 (4 HSPs)
chr3 (1-273)||(40966512-40966784)
chr3 (73-120)||(51107679-51107728)
chr3 (73-121)||(28260028-28260078)
chr3 (67-120)||(36473717-36473772)
[»] chr7 (1 HSPs)
chr7 (76-127)||(30218743-30218796)
[»] chr2 (4 HSPs)
chr2 (67-121)||(17642631-17642687)
chr2 (66-119)||(34384083-34384136)
chr2 (72-121)||(24895769-24895820)
chr2 (69-126)||(17642429-17642488)
[»] chr1 (3 HSPs)
chr1 (67-120)||(9117503-9117558)
chr1 (67-99)||(10840514-10840546)
chr1 (67-127)||(27086280-27086342)
[»] chr4 (3 HSPs)
chr4 (67-123)||(38851972-38852030)
chr4 (42-123)||(2478933-2479016)
chr4 (67-120)||(5521535-5521590)
[»] chr8 (1 HSPs)
chr8 (68-126)||(22210266-22210326)
[»] chr5 (1 HSPs)
chr5 (67-100)||(38142395-38142428)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 40966512 - 40966784
Alignment:
Q  1 ccagctattagggacaacaaatgaaactgaaaattttgggaggacgaaaaatatctcgtttgtatgtttaaggactaaaatcaaaatttgttatattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966512 ccagctattagggacaacaaatgaaactgaaaattttgggaggacgaaaaatatctcgtttgtatgtttaaggactaaaatcaaaatttgttatattttt 40966611  T
Q  101 atggacaaaacttatttaaccttaaatttaattatgataggtaataatgtttttgaggggatccttgttggttattctgtttaatttaatcaaattcaat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966612 atggacaaaacttatttaaccttaaatttaattatgacaggtaataatgtttttgaggggatccttgttggttattctgtttaatttaatcaaattcaat 40966711  T
Q  201 caattttatcagattaagtgacaagcaaacgtgggttaccacttacatcaccatatgtgttgacatgtctctc 273  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966712 ccattttatcagattaagtgacaagcaaacgtgggttaccacttacatcaccatatgtgttgacatgtctctc 40966784  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 51107728 - 51107679
Alignment:
Q  73 gactaaaatcaaaatttgttatatttttatggacaa--aacttatttaac 120  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  51107728 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 51107679  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 28260028 - 28260078
Alignment:
Q  73 gactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacc 121  Q
    |||||||||||||||||| |||||||||| ||||  |||||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaacc 28260078  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 36473772 - 36473717
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaac 120  Q
    |||||| |||||||||||||||||||| ||||||| |||   ||||||||||||||    
T  36473772 tttaagaactaaaatcaaaatttgttaaatttttaaggattgaaaacttatttaac 36473717  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 30218796 - 30218743
Alignment:
Q  76 taaaatcaaaatttgttatatttttatggac--aaaacttatttaaccttaaat 127  Q
    ||||||||||||| ||||||||| |||||||  |||||||||||||||||||||    
T  30218796 taaaatcaaaattcgttatatttatatggacgaaaaacttatttaaccttaaat 30218743  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 17642631 - 17642687
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacc 121  Q
    |||||||||||||||||||||| | |||||||||| ||||  |||||||||||||||    
T  17642631 tttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 34384083 - 34384136
Alignment:
Q  66 gtttaaggactaaaatcaaaatttgttatatttttatggacaaaacttatttaa 119  Q
    ||||| |||||||||||||| |||| |||||||||||| || ||||||||||||    
T  34384083 gtttagggactaaaatcaaattttgctatatttttatgaacgaaacttatttaa 34384136  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 24895769 - 24895820
Alignment:
Q  72 ggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacc 121  Q
    ||||||||||||||||||||||||||| || ||||  |||||||||||||||    
T  24895769 ggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaacc 24895820  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 17642488 - 17642429
Alignment:
Q  69 taaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaaccttaaa 126  Q
    ||||||||||||||||||| | |||||||| || |||   ||||||||||||||||||||    
T  17642488 taaggactaaaatcaaaatctattatatttatagggatgaaaaacttatttaaccttaaa 17642429  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 9117503 - 9117558
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaac 120  Q
    |||||| ||||||||||||||||||||||||| || ||||  ||||||||||||||    
T  9117503 tttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaac 9117558  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 10840514 - 10840546
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttt 99  Q
    |||||||||||||||||||||||||||||||||    
T  10840514 tttaaggactaaaatcaaaatttgttatatttt 10840546  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 27086280 - 27086342
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaaccttaaat 127  Q
    ||||||||||||||||| |||||||||||||| || |||   ||||||||||||||| |||||    
T  27086280 tttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaaccctaaat 27086342  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 38852030 - 38851972
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacctt 123  Q
    |||||||| |||||||||||||| |||||||||||  |||  |||||||||||||||||    
T  38852030 tttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacctt 38851972  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 2479016 - 2478933
Alignment:
Q  42 ggacgaaaaatatctcgtttgtatgtttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaacctt 123  Q
    |||||||||| ||||| |||  || |||| |||||||||||||||||   ||||||| || ||||  |||||||||||||||||    
T  2479016 ggacgaaaaacatctcattttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacctt 2478933  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 5521535 - 5521590
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatatttttatggac--aaaacttatttaac 120  Q
    |||||||||||||||||||||| | ||||||| || ||||  ||||||||||||||    
T  5521535 tttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 22210266 - 22210326
Alignment:
Q  68 ttaaggactaaaatcaaaatttgttatatttttatgga--caaaacttatttaaccttaaa 126  Q
    ||||||| ||||||||||||| ||||||||| || |||   ||||||||||||||||||||    
T  22210266 ttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaaccttaaa 22210326  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 38142428 - 38142395
Alignment:
Q  67 tttaaggactaaaatcaaaatttgttatattttt 100  Q
    |||||||||||||||||||||||| |||||||||    
T  38142428 tttaaggactaaaatcaaaatttgctatattttt 38142395  T

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