View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_23 (Length: 269)
Name: NF4147_low_23
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4008501 - 4008238
Alignment:
| Q |
1 |
cagagatagcgtataat---tttccaggacaagatctaactaagagttggatcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccct |
97 |
Q |
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| T |
4008501 |
cagagatagcatataataaatttccaggacaagatctaactaagagttggatcaatgaactgccattatcttttggatctcaaagcacgctagaaaccct |
4008402 |
T |
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| Q |
98 |
gattttaagaggctgtagaattgagaggataccttcaagcatnnnnnnncttactagactaagatatataaacctgaccttttgcatcaagcttatgact |
197 |
Q |
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| T |
4008401 |
gattttcaaaggctgtagaattgagaggatacctccaagcataaaaaatcgtactagactaagatatataaacctgactttttgcatcaagcttcggact |
4008302 |
T |
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| Q |
198 |
ctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtat |
261 |
Q |
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| T |
4008301 |
ataccagagcttccatcatcacttgaaactctattggctgaatgtgaatcactgaagactgtat |
4008238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 3985533 - 3985442
Alignment:
| Q |
48 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcat |
139 |
Q |
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| T |
3985533 |
atcaatgcactgccatcatcttttggatgtcaaagcaagctagaaaccctggttttaagaggtactcaaattgagagcataccttcaagcat |
3985442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 4023628 - 4023518
Alignment:
| Q |
29 |
agatctaactaagagttggatcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggata |
128 |
Q |
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| T |
4023628 |
agatctaactaacatttgtatcaatgcactgccatcatcttttggatgtcaaagcaggctagaaatactggttttaagatacagtgaaattgagagcata |
4023529 |
T |
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| Q |
129 |
ccttcaagcat |
139 |
Q |
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||||||||||| |
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| T |
4023528 |
ccttcaagcat |
4023518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 3808576 - 3808485
Alignment:
| Q |
48 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcat |
139 |
Q |
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| T |
3808576 |
atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctgaatttaagttacactaaaattgagagcataccttcaagcat |
3808485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 3934841 - 3934932
Alignment:
| Q |
48 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcat |
139 |
Q |
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| T |
3934841 |
atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctggttttaaaagccactcaaattgagagcataccttcaagcat |
3934932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 3957221 - 3957297
Alignment:
| Q |
186 |
aagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtatt |
262 |
Q |
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| T |
3957221 |
aagcttgtggctctacccgagcttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatt |
3957297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 3921622 - 3921713
Alignment:
| Q |
48 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcat |
139 |
Q |
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| T |
3921622 |
atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctgaatttaagtgacactgaaattgagagcatacattcaagcat |
3921713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 4000555 - 4000477
Alignment:
| Q |
186 |
aagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtattgt |
264 |
Q |
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| T |
4000555 |
aagcttctggctctacctgtgcttcctttatcagttgaaactctacttgttgaatgtatatcactgaagactgtattgt |
4000477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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