View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_24 (Length: 257)
Name: NF4147_low_24
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 5679698 - 5679446
Alignment:
| Q |
4 |
gggtaaattattctgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacata |
103 |
Q |
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| T |
5679698 |
gggtcaattattatgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatg |
5679599 |
T |
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| Q |
104 |
gatgctaggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaacaatgctat |
203 |
Q |
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| T |
5679598 |
gatgctaggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaac-atgctat |
5679500 |
T |
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| Q |
204 |
gttgagttgtgctatataagatgttgaaatagtggtagggacaaagttaatgaa |
257 |
Q |
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| T |
5679499 |
gttgagttgtgctatataagatgttgaaatagtggtagggacaaagttaatgaa |
5679446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 5704750 - 5704498
Alignment:
| Q |
4 |
gggtaaattattctgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacata |
103 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704750 |
gggtcaattattatgcaaattggttattggtgggctacacaactagtccaaattttcctaaatataaagattcctcttctatatgttggaaatttacatg |
5704651 |
T |
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| Q |
104 |
gatgctaggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaacaatgctat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5704650 |
gatgctaggagtatgtgtttccttaagcctcctatgtggagtctcacacactgaaactggcctatgtaaagaagagttaaatggtttgcaac-atgctat |
5704552 |
T |
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| Q |
204 |
gttgagttgtgctatataagatgttgaaatagtggtagggacaaagttaatgaa |
257 |
Q |
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| T |
5704551 |
gttgagttgtgctatataagatgttgaaatagtggtagggacaaagttaatgaa |
5704498 |
T |
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