View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4147_low_25 (Length: 255)

Name: NF4147_low_25
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4147_low_25
NF4147_low_25
[»] chr5 (10 HSPs)
chr5 (23-234)||(39460281-39460492)
chr5 (29-238)||(39464457-39464666)
chr5 (32-237)||(39475546-39475754)
chr5 (29-230)||(39472073-39472274)
chr5 (29-231)||(39470687-39470889)
chr5 (99-231)||(39486572-39486704)
chr5 (92-170)||(39451100-39451178)
chr5 (29-237)||(39458218-39458426)
chr5 (29-170)||(39454676-39454817)
chr5 (194-234)||(39451205-39451245)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 39460281 - 39460492
Alignment:
Q  23 ctaacaaaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccg 122  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| || |    
T  39460281 ctaaccaaccgtgataagcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctg 39460380  T
Q  123 attctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |    
T  39460381 attctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaacttccagaatgatggctttcctcgaagctcagaaatcaaacgt 39460480  T
Q  223 caaacaagccgt 234  Q
    ||||||||||||    
T  39460481 caaacaagccgt 39460492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 39464666 - 39464457
Alignment:
Q  29 aaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctc 128  Q
    |||||||||||||| |||||||||||  || ||||||| ||||||||| | ||  || ||||||||||  ||||||||||  ||||||  || |||||||    
T  39464666 aaccgtgataaccgtctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctc 39464567  T
Q  129 tcgacatcatcaaccttccagaagtttctcttcccccaaacatc-gaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaac 227  Q
    |  |  |||||||||||||||||||||||||||||| |||| || || ||| |||||   ||||| ||| |||| || ||||| ||||||||| ||||||    
T  39464566 ttaatgtcatcaaccttccagaagtttctcttcccc-aaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaacgtcaaac 39464468  T
Q  228 aagccgtctct 238  Q
    |||||||||||    
T  39464467 aagccgtctct 39464457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 39475546 - 39475754
Alignment:
Q  32 cgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcg 131  Q
    ||||||||||| |||||| |||||||  |||| || ||| ||||| ||| |||| ||   ||||| ||||||||||| ||||| | ||| || ||||||     
T  39475546 cgtgataaccgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctca 39475645  T
Q  132 acatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagt---tccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaaca 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||| ||   ||    ||||  ||| ||||||||||||||||||||||| | |||||    
T  39475646 acatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaaca 39475745  T
Q  229 agccgtctc 237  Q
    ||| |||||    
T  39475746 agctgtctc 39475754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 39472073 - 39472274
Alignment:
Q  29 aaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctc 128  Q
    |||||||||||||| ||||||||||||||  |||| || ||| ||||| |||  ||| || |||||||  |||||||||| ||||| | ||||||||| |    
T  39472073 aaccgtgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcac 39472172  T
Q  129 tcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaaca 228  Q
    || ||||||||||||||||||||  ||||||| |||||||||  || | | || ||   ||||  ||  ||||||||||||||||||||||| |||||||    
T  39472173 tccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctctatgactgcgctcctcgaagctcagaaaccaaacgtcaaaca 39472272  T
Q  229 ag 230  Q
    ||    
T  39472273 ag 39472274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 39470889 - 39470687
Alignment:
Q  29 aaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctc 128  Q
    |||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||  || |||| |||||  || |||||||  |||||| ||| |||||||    
T  39470889 aaccatgataaccgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctc 39470790  T
Q  129 tcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaaca 228  Q
    || |  ||||||||||||||||||||||| ||| ||||| |   || ||| ||||    ||||| ||| ||||||||||||| ||| ||||| |||||||    
T  39470789 tccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaaaca 39470690  T
Q  229 agc 231  Q
    |||    
T  39470689 agc 39470687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 39486572 - 39486704
Alignment:
Q  99 acactaaatctcttcccacctccgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggcttt 198  Q
    |||| ||||| |||||||  |||||||||||| |  |||||||||||||||||  ||||||||||||||||| ||||||| |||     ||||| ||| |    
T  39486572 acacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatgaacgctct 39486671  T
Q  199 cctcgaagctcagaaaccaaacatcaaacaagc 231  Q
    ||| |||||||||||||||||| ||||||||||    
T  39486672 ccttgaagctcagaaaccaaacgtcaaacaagc 39486704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 39451100 - 39451178
Alignment:
Q  92 gatgttaacactaaatctcttcccacctccgattctctcgacatcatcaaccttccagaagtttctcttcccccaaaca 170  Q
    ||||| ||||||||||| ||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  39451100 gatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaaca 39451178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 39458426 - 39458218
Alignment:
Q  29 aaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctc 128  Q
    |||||||||||||| |||||||||||| || | ||||||||| | ||| |||||||| ||   |||||  |||||||||| ||| ||| |  ||||||||    
T  39458426 aaccgtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatcgacgattctc 39458327  T
Q  129 tcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaaca 228  Q
    |  ||||  || |||||||||||  ||||||||||||||||  | |   || |||| | |||  || | ||||| ||||||||||||||||| ||||| |    
T  39458326 ttaacattgtcgaccttccagaatgttctcttcccccaaactccaatataacttccggcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaa 39458227  T
Q  229 agccgtctc 237  Q
    |||||||||    
T  39458226 agccgtctc 39458218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 39454676 - 39454817
Alignment:
Q  29 aaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctc 128  Q
    |||||||||||||| ||||||||||||||  ||||| | ||| | ||| || | ||  || | |||||  ||| |||||||||||| | |||||||||      
T  39454676 aaccgtgataaccgtctccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaa 39454775  T
Q  129 tcgacatcatcaaccttccagaagtttctcttcccccaaaca 170  Q
    ||  |||||||||||||||||||   ||||||||||||||||    
T  39454776 tccgcatcatcaaccttccagaatgctctcttcccccaaaca 39454817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 39451205 - 39451245
Alignment:
Q  194 gctttcctcgaagctcagaaaccaaacatcaaacaagccgt 234  Q
    ||| ||||||||||||||||||||||  |||||||||||||    
T  39451205 gctctcctcgaagctcagaaaccaaatgtcaaacaagccgt 39451245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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