View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_27 (Length: 243)
Name: NF4147_low_27
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 55396916 - 55397132
Alignment:
| Q |
11 |
catcatcatctggagttctgaaagtgcgaaattcgtcccaaaaacgctgccactttggttcaatttcatggaaaggataagctctgttaaccggcttctt |
110 |
Q |
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| T |
55396916 |
catcatcatctggagttctgaaagtgcaaaattcgtcccaaaaacgctgccactttggttcaatttcatggaaaggataagctctgttaaccggcttctt |
55397015 |
T |
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| Q |
111 |
ctgctccgtttcgttcagtttaacatcattcgtcgacgagtttctgagtctgcgagtgaaactacggaatctgagagtagaaaaggaggttcttcttctg |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55397016 |
ctgctccgtttcgttcagttgaacatcattcgtcgacgagtttctgagtctgcgagtgaaactacggaatctgagagtagaaaaggaggttcttcttctg |
55397115 |
T |
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| Q |
211 |
attggtgtgggaaaagg |
227 |
Q |
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| T |
55397116 |
attggtgtgggaaaagg |
55397132 |
T |
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