View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4147_low_28 (Length: 241)

Name: NF4147_low_28
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4147_low_28
NF4147_low_28
[»] chr3 (6 HSPs)
chr3 (9-105)||(5736214-5736310)
chr3 (9-105)||(5773326-5773422)
chr3 (9-132)||(5697524-5697660)
chr3 (163-227)||(5671746-5671810)
chr3 (159-224)||(5796132-5796197)
chr3 (163-227)||(5681243-5681307)
[»] chr8 (2 HSPs)
chr8 (9-76)||(41482134-41482203)
chr8 (9-76)||(41485400-41485469)
[»] chr2 (2 HSPs)
chr2 (9-72)||(45385654-45385716)
chr2 (159-216)||(45384923-45384980)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 5736310 - 5736214
Alignment:
Q  9 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaactataccaagaaaatagagaacactcctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5736310 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaactataccaagaaaatagagaatactcctt 5736214  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 5773422 - 5773326
Alignment:
Q  9 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaactataccaagaaaatagagaacactcctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5773422 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaactataccaagaaaatagagaatactcctt 5773326  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 5697660 - 5697524
Alignment:
Q  9 gaacctgtgcatctctcagggaatttct---acttgccatgttaattgtggtgaagtgtgggaaacaacaactataccaagaaaatagagaa-------- 97  Q
    ||||||||| ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||            
T  5697660 gaacctgtgaatctctcagggaatttcttctacttgccatgttaattgtggtaaagtgtgggaaacaacaattataccaagaaattagagaaaaatacag 5697561  T
Q  98 --cactccttttgttgcttaagatattctcttaatat 132  Q
       ||||||||||||||||||||||||||||||||||    
T  5697560 attactccttttgttgcttaagatattctcttaatat 5697524  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 5671810 - 5671746
Alignment:
Q  163 tctggttggatatagaccagttgatggcacatccatcttttatccagtctctcccatttcattac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5671810 tctggttggatatagaccagttgatggcacatccatcttttatccagtctcttccatttcattac 5671746  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 5796197 - 5796132
Alignment:
Q  159 agtctctggttggatatagaccagttgatggcacatccatcttttatccagtctctcccatttcat 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5796197 agtctctggttggatatagaccagttgatgacacatccatcttttatccagtctctcccgtttcat 5796132  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 5681307 - 5681243
Alignment:
Q  163 tctggttggatatagaccagttgatggcacatccatcttttatccagtctctcccatttcattac 227  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  5681307 tctggttggatatagaccagttgatggcacattcatcttttatccagtctcttccatttcattac 5681243  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 41482134 - 41482203
Alignment:
Q  9 gaacctgtgcatctctcaggga--atttctacttgccatgttaattgtggtgaagtgtgggaaacaacaa 76  Q
    |||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||    
T  41482134 gaacctgtgcatctctcaggggggatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaa 41482203  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 41485400 - 41485469
Alignment:
Q  9 gaacctgtgcatctctcaggga--atttctacttgccatgttaattgtggtgaagtgtgggaaacaacaa 76  Q
    |||||||||||||||||||||   |||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  41485400 gaacctgtgcatctctcaggggggatttctacttgctatgtttattatggtgaagtgttggaaacaacaa 41485469  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 45385716 - 45385654
Alignment:
Q  9 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaaca 72  Q
    ||||||||||||||||||||||||||||||||||  |||| ||| ||||||| |||||||||||    
T  45385716 gaacctgtgcatctctcagggaatttctacttgctttgtt-attctggtgaaatgtgggaaaca 45385654  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 45384980 - 45384923
Alignment:
Q  159 agtctctggttggatatagaccagttgatggcacatccatcttttatccagtctctcc 216  Q
    ||||| |||||||||||||||| ||||||||  ||||||||| |  ||||||||||||    
T  45384980 agtctatggttggatatagaccggttgatggtgcatccatctctcttccagtctctcc 45384923  T

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