View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_29 (Length: 239)
Name: NF4147_low_29
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 31819748 - 31819538
Alignment:
| Q |
23 |
tgagtcatcatgaattatgatttacatagattacattatgaagtttcaacgaaaccatgatatatacattgtaattttagcaaacccgctataaccctaa |
122 |
Q |
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| T |
31819748 |
tgagtcatcatgaattatgatttacatagattacatcatgaagtttcaacgaaaccatgatatatacattgtaattttagcaaacccgctataaccctaa |
31819649 |
T |
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| Q |
123 |
ttctaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcattttcttttagacatattagagtttaagaagag |
222 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819648 |
ttttaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcattttcttttagacatattagagtttaagaagag |
31819549 |
T |
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| Q |
223 |
ttcatctcact |
233 |
Q |
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| T |
31819548 |
ttcatctcact |
31819538 |
T |
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