View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4147_low_3 (Length: 582)
Name: NF4147_low_3
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 36525642 - 36525272
Alignment:
| Q |
1 |
cgcaactaagttgttacaatgaatccaaatctatttagaagtatgtggcttagagcaatcacactgcatttatttacttacttgaactgctctcacattg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36525642 |
cgcaactacgttgttacaatgaatccaaatctatttagaagtatgtggcttagagcaatcacactgcatttatttacttacttgaactgctcttacattg |
36525543 |
T |
|
| Q |
101 |
aagtgacccaagtccgcaaacatggcctcagccccttgttcatgaagagggttgttatagaagaaaatatgtgtatgtgcatgtatttttattgtttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525542 |
aagtgacccaagtccgcaaacatggcctcagcccctggttcatgaagagggttgttatagaagaaaatatgtgtatgtgcatgtatttttattgtttttg |
36525443 |
T |
|
| Q |
201 |
taacagtatgtgcatgtataaatatataaagagcacctgactaannnnnnnnnnnnnnnnnnnnnaagagcataaagaaaacaatttaagaaaaaagtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525442 |
taacagtatgtgcatgtataaatatataaagagcacttgaccaa--atatatatatatatatataaagagcataaagaaaacaatttaagaaaaaagtgt |
36525345 |
T |
|
| Q |
301 |
tatagaagaaaattgtgcttctaatatggacctgaaaaaagtccagaagttgacgcttaaaaacacatctttt |
373 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36525344 |
tatagaagaaaattgcgcttctaatatggacctgaaaaaagtccagaagttgacgcttaaaaacacatttttt |
36525272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 355 - 564
Target Start/End: Complemental strand, 36525238 - 36525027
Alignment:
| Q |
355 |
gcttaaaaacacatcttttctctaactttgtttgcatttgtaaaattcataattagaatcaca--gaataaaacagttgttgatgccagtcacctgtaat |
452 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525238 |
gcttaaaaacacatattttctccaactttgtttacatttgtaaaattcataattagaatcacacagaataaaacagttgttgatgccagtcacctgtaat |
36525139 |
T |
|
| Q |
453 |
gcacataaagattccaccaagagaaatccacccttctttaccattccttttcatgtaatctacaatgtactttggattgaaggctcgcaaaacaccaata |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525138 |
gcacataaagattccaccaagagaaatccacccttctttaccattccttttcatgtaatctacaatgtactttggattgaaggctcgcaaaacaccaata |
36525039 |
T |
|
| Q |
553 |
tcatgtttgatc |
564 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36525038 |
tcatgtttgatc |
36525027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 7800428 - 7800396
Alignment:
| Q |
98 |
ttgaagtgacccaagtccgcaaacatggcctca |
130 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
7800428 |
ttgaagtgacccaagtcagcaaacatggcctca |
7800396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University