View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_31 (Length: 236)
Name: NF4147_low_31
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5679116 - 5678895
Alignment:
| Q |
1 |
agccactctcaagggccacacaatggaaggtttttctagaggcaatatgagtgctctctttgattgacaatgtggacactatgggattagagaattgatg |
100 |
Q |
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| T |
5679116 |
agccactctcaagggccacacaatggaaggtttttctagaggcaatatgagtgctctctttgattgacaatgtggacactatgggattagagaattgatg |
5679017 |
T |
|
| Q |
101 |
acattgtgaaagtgacagaaactaaaatgttttgttttcattcgttaatgcaatccaattcttatagttnnnnnnncaaacctgaaaagtggataggtaa |
200 |
Q |
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| T |
5679016 |
acattgtgaaagtgacagaaactaaaatgttttgttttcattcgttaatgtaatccaattcttatagttaaaaaaacaaacctgaaaagtggataggtaa |
5678917 |
T |
|
| Q |
201 |
agtaaatccaccggaagatctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5678916 |
agtaaatccaccggaagatctt |
5678895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5704168 - 5703947
Alignment:
| Q |
1 |
agccactctcaagggccacacaatggaaggtttttctagaggcaatatgagtgctctctttgattgacaatgtggacactatgggattagagaattgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704168 |
agccactctcaagggccacacaatggaaggtttttctagaggcaatatgagtgctctctttgattgacaatgtggacactatgggattagagaattgatg |
5704069 |
T |
|
| Q |
101 |
acattgtgaaagtgacagaaactaaaatgttttgttttcattcgttaatgcaatccaattcttatagttnnnnnnncaaacctgaaaagtggataggtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5704068 |
acattgtgaaagtgacagaaactaaaatgttttgttttcattcgttaatgtaatccaattcttatagttaaaaaaacaaacctgaaaagtggataggtaa |
5703969 |
T |
|
| Q |
201 |
agtaaatccaccggaagatctt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5703968 |
agtaaatccaccggaagatctt |
5703947 |
T |
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Back To:
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