View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_5 (Length: 508)
Name: NF4147_low_5
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 503
Target Start/End: Original strand, 3744620 - 3745109
Alignment:
| Q |
14 |
catcacacaagcacgaccttaaaaaacaacctggtactcttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagca |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744620 |
catcacacaagcacgaccttaaaaaacaacctagtactcttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagca |
3744719 |
T |
|
| Q |
114 |
atctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaaacagcat |
213 |
Q |
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| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3744720 |
acctgaacctgaatggttctaggtttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaaacagcat |
3744819 |
T |
|
| Q |
214 |
cagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccct |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744820 |
cagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccct |
3744919 |
T |
|
| Q |
314 |
cttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatgaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744920 |
cttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatgaa |
3745019 |
T |
|
| Q |
414 |
ttctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatgatgtc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745020 |
ttctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatgatgtc |
3745109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
106 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
150 |
Q |
| |
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|||||||||||||||| ||||| |||||||| ||||||||||||| |
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|
| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 107 - 412
Target Start/End: Original strand, 48302914 - 48303219
Alignment:
| Q |
107 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
206 |
Q |
| |
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|||||||| || ||| ||||| ||| | ||||||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||| ||||||||||| |
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|
| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
|
| Q |
207 |
acagca---tcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttct |
303 |
Q |
| |
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||| || ||| || ||||||||| || | |||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||| |
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| T |
48303014 |
acaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttct |
48303110 |
T |
|
| Q |
304 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
403 |
Q |
| |
|
||||||| |||||||| || |||||||||| |||||| || |||||||| ||||||||||| || || ||||||||||| ||||||||||| | |||||| |
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|
| T |
48303111 |
cttcttctctcttcctttcaccgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaa |
48303210 |
T |
|
| Q |
404 |
cacgtatga |
412 |
Q |
| |
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||||||||| |
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|
| T |
48303211 |
cacgtatga |
48303219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
304 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
403 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| |
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| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
|
| Q |
404 |
cacgtatga |
412 |
Q |
| |
|
||| |||| |
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|
| T |
10462170 |
tacgaatga |
10462162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
304 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
403 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
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|
| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
|
| Q |
404 |
cacgtatgaattctgatcttcctt |
427 |
Q |
| |
|
|||||| || || |||| |||||| |
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| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 10462434 - 10462342
Alignment:
| Q |
146 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctcaggaag |
235 |
Q |
| |
|
|||||||||||||||||||| || |||||||| | || ||||||||| || | ||||| ||||||||||||| |||||||||||||||||| |
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| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctcaggaag |
10462342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
270 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
349 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
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|
| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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