View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_6 (Length: 471)
Name: NF4147_low_6
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 36262357 - 36262008
Alignment:
| Q |
17 |
atatactatatgatcaaaatcttatattagttcagaaag-----aaactat----gtaactatatgtgtacgtatgatgagtttgtaaaggaaagattag |
107 |
Q |
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| T |
36262357 |
atatactatatgatcaaaatcttatattagttcagaaacgtaacaaactatatatgtaactatatgtgtacgtatgatgagtttgtaaaggaaagattag |
36262258 |
T |
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| Q |
108 |
gagacaccttttgcaagaaagggacagagacaaaggagccagagcctttacatgtatctgaggaatccttgtttgtatctaaaacaacctcatgggtttc |
207 |
Q |
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| T |
36262257 |
gagacaccttttgcaagaaagggacagagacaaaggagccagagcctttacatgtatctgaggaatccttgtttgtatctaaaacaacctcatgggtttc |
36262158 |
T |
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| Q |
208 |
aattcttgctgaattatcattagccataagtgatagagaacaaggaaactattta--------gaaacaaacaacacaatacgctgtgttatgtcttgcc |
299 |
Q |
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| T |
36262157 |
aattcttgctgaattatcattagccataagtgatagagaacaaggaaactatttagaaatttagaaacaaacaacacaatacgctgtgttatgtcttgcc |
36262058 |
T |
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| Q |
300 |
tcctcaacctgaaataaacgactccaatttataggcagacagttaggtac |
349 |
Q |
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| T |
36262057 |
tcctcaacctcaaataaacgactccaatttataggcagacagttaggtac |
36262008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 461
Target Start/End: Complemental strand, 36261934 - 36261895
Alignment:
| Q |
422 |
attcgacaaacaactatttaggtcatgcgttatccctatg |
461 |
Q |
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| T |
36261934 |
attcgacaaacaactatttaggtcatgcgttatccctatg |
36261895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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