View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4147_low_7 (Length: 453)
Name: NF4147_low_7
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4147_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 50248637 - 50248211
Alignment:
| Q |
19 |
aagccatactctataagttcattacagtgtatttttcgacttgttgcttatagaaaattagaccggaaggagtagcggaaaattgcaactgtgattaaac |
118 |
Q |
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| T |
50248637 |
aagccatactctagaagttcattacagtgtatttttcaacttgttgcttatagaaaattagaccggaaggagtagcggaaaattgtaactgtgattaaac |
50248538 |
T |
|
| Q |
119 |
ctttgattgaaaaattgttagaataaattaatggaaatgatcaggaaataagaagcataatctccagtcctttttgatnnnnnnnttt-cctcctcttgg |
217 |
Q |
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| T |
50248537 |
cattgactgaaaaattgttagaataaattaatggaaatgatcaggaaataaggagcataatctccagtcctttttgataatttttttttcctcctcttgg |
50248438 |
T |
|
| Q |
218 |
aatattaagcattggaaatatttaaacttaacatacagctgtctagaaaatttgggaggtgagaaatggtatgtattatctcgtggagacgacttcttgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50248437 |
aatattaagcattggaaatatttaaacttaacatacagctgtctagaaaatttgggaggtgacaaatggtatgtattatctcgtggagacgacttcttgc |
50248338 |
T |
|
| Q |
318 |
taaggtggtgggt-gacatgtttgtattatgaatggttttcaaatcttttcacttgtcnnnnnnnngttcgatcacctttgtaatttggtgaatcgtgta |
416 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
50248337 |
taaggtggtgggtggacatgtttgtattatgaatggttttcaaatcttgtcacttgtcttttttttgttcgatcacctttgtaatttggtgaatcatgta |
50248238 |
T |
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| Q |
417 |
ccctttgtacttttccataattgatga |
443 |
Q |
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| T |
50248237 |
ctctttgtacttttccataattgatga |
50248211 |
T |
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