View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4147_low_8 (Length: 444)

Name: NF4147_low_8
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4147_low_8
NF4147_low_8
[»] chr3 (3 HSPs)
chr3 (1-432)||(40966104-40966535)
chr3 (177-234)||(33309977-33310035)
chr3 (175-234)||(31989800-31989860)
[»] chr2 (2 HSPs)
chr2 (177-234)||(35665325-35665383)
chr2 (179-234)||(17642631-17642687)
[»] chr7 (1 HSPs)
chr7 (177-232)||(30219060-30219116)
[»] chr4 (2 HSPs)
chr4 (179-234)||(44340988-44341044)
chr4 (179-234)||(51203221-51203277)
[»] chr5 (1 HSPs)
chr5 (177-234)||(36060768-36060826)
[»] chr8 (1 HSPs)
chr8 (179-234)||(33657600-33657656)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 40966104 - 40966535
Alignment:
Q  1 aagaggttactatgtcttttgatggtgacttgcaaatttatgcttttaaaactttggttaattccaccattcaagtgcgcattgagaagctttcaaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966104 aagaggttactatgtcttttgatggtgacttgcaaatttatgcttttaaaactttggttaattccaccattcaagtgcgcattgagaagctttcaaacaa 40966203  T
Q  101 gtaaggcatcatcattcatcactattttgttagttattattatgagtagtagaatagaagttctgagattaatgtaagggttaaataagttttccgtcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40966204 gtaaggcatcatcattcatcactattttgttagttattattatgagtagtagaatagaagttctgagattaatgtaagggttaaataagttttccatcct 40966303  T
Q  201 aaaaatatagcgaattcttattttagtccctaaatataaaaacatgttttcttcctcccaaaatattccattttgtttttgatccccagtagacataatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40966304 aaaaatatagcgaattcttattttagtccctaaatataaaaacatgttttcttcctcccaaaatattccattttgtttttgatccccaatagacataatt 40966403  T
Q  301 tgtaacataatatatgcacatgtttggattggacatagtagatagacgtaaattggaaacattttgaatataaatgggtcataaccttgacattagcatg 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966404 tgtaacataatatatgcacacgtttggattggacatagtagatagacgtaaattggaaacattttgaatataaatgggtcataaccttgacattagcatg 40966503  T
Q  401 aatgcaaaccagctattagggacaacaaatga 432  Q
    ||||||||||||||||||||||||||||||||    
T  40966504 aatgcaaaccagctattagggacaacaaatga 40966535  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 33310035 - 33309977
Alignment:
Q  177 agggttaaataagttttccgtcc-taaaaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||||| | ||| |||| |||||||||||| |||||||||||||||||    
T  33310035 agggttaaataagtttttcttccctaaatatatagcgaatttttattttagtccctaaa 33309977  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 31989800 - 31989860
Alignment:
Q  175 taagggttaaataagttttccgtcc-taaaaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||||||| ||||| || ||||||| | |||| | |||||||||||||||    
T  31989800 taagggttaaataagtttttcgtccatataaatatatcaaattttcattttagtccctaaa 31989860  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 35665325 - 35665383
Alignment:
Q  177 agggttaaataagttttccgtcctaa-aaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||||| |||||| | |||||||||||||| | |||||||||||||||    
T  35665325 agggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctaaa 35665383  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 17642687 - 17642631
Alignment:
Q  179 ggttaaataagttttccgtcc-taaaaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| ||||    
T  17642687 ggttaaataagtttttcgtccctaaaaatatagcgaattttgattttagtccttaaa 17642631  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 30219116 - 30219060
Alignment:
Q  177 agggttaaataagttttccgtcctaa-aaatatagcgaattcttattttagtcccta 232  Q
    ||||||||||||||||| |||||| | |||||||||||||| | |||||||||||||    
T  30219116 agggttaaataagtttttcgtccttataaatatagcgaattttgattttagtcccta 30219060  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 44341044 - 44340988
Alignment:
Q  179 ggttaaataagttttccgtccta-aaaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||| ||||||| |||| ||| |||||||| |||||||||||||||    
T  44341044 ggttaaataagtttttcgtcctaaaaaacataacgaattctgattttagtccctaaa 44340988  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 51203221 - 51203277
Alignment:
Q  179 ggttaaataagttttccgtcc-taaaaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||| ||||| || |||||| ||||||| | |||||||||||||||    
T  51203221 ggttaaataagtttttcgtccctataaatattgcgaattttgattttagtccctaaa 51203277  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 36060826 - 36060768
Alignment:
Q  177 agggttaaataagttttccgtc-ctaaaaatatagcgaattcttattttagtccctaaa 234  Q
    ||||||||||||||||| |||  |||||||||||| ||||| | |||||||||||||||    
T  36060826 agggttaaataagtttttcgtttctaaaaatatagtgaattttgattttagtccctaaa 36060768  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 33657656 - 33657600
Alignment:
Q  179 ggttaaataagttttccgtcct-aaaaatatagcgaattcttattttagtccctaaa 234  Q
    |||||||||| |||| |||||| |||||||||||||||| | |||||||| ||||||    
T  33657656 ggttaaataaatttttcgtccttaaaaatatagcgaattttgattttagttcctaaa 33657600  T

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